Query= MSMg01no303_m01.b1 MSMg01no303_m01.b1 CHROMAT_FILE:
MSMg01no303_m01.b1 PHD_FILE: MSMg01no303_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:44 2005
(701 letters)
>mm_chrX_140258914_140260015
Length = 1102
Score = 1280 bits (662), Expect = 0.0
Identities = 689/698 (98%), Gaps = 1/698 (0%)
Strand = Plus / Plus
Query: 5 gaattctaaatcaaaattgattttaaaaaacagaacacagatcacaaattactttggatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaatcaaaattgattttaaaaaacagaacacagatcacaaattactttggatt 264
Query: 65 caaaggagtaggtgaagtacccagttactcttaaggggcattgggtgagctacacgtgta 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaggagtaggtgaagcacccagttactcttaaggggcattgggtgagctacacgtgta 324
Query: 125 tggctttgatgacactgtctctggctaccttctcccccatactctgcaaaaatagagata 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 tggctttgatgacactgtctctggctaccttttcccccatactctgcaaaaatagagata 384
Query: 185 aatgggggcacaattagtataggagacttaattctgtcctggtttagacataatcttatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgggggcacaattagtataggagacttaattctgtcctggtttagacataatcttatt 444
Query: 245 cctcctactggaggtgatggggcagattccttgggctttaatggggagacttcagcatct 304
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcctactggaggtgatggggtagattccttgggctttaatggggagacttcagcatcc 504
Query: 305 atgtgctcccgagagaacagtgcttgccatttctgcacaaggaga-tcttatcttccatc 363
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 505 atgtgctcccgagagaacagtgcttgccatttctgcacaaggggaatcttatcttccatc 564
Query: 364 tgtggtcacatatctgccagagcactctgaagtggctgttgacattcaaggttttgttgg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtggtcacatatctgccagagcactctgaagtggctgttgacattcaaggttttgttgg 624
Query: 424 ccagacactctgggatcagaaaggagccttcagagttccctaatcaactcttctgttttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagacactctgggatcagaaaggagccttcagagttccctaatcaactcttctgttttc 684
Query: 484 cataggatatatttactctgtccagagagaggactgtgttcaaagaagaaagagcacacc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cataggatatatttactctgtccagagagaggactgtgttcaaagaagaaagagcacacc 744
Query: 544 acagacagtgttgaaaaactacatcaagaagtaaaagacacttcaaaaatcataaacaga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acagacagtgttgaaaaactacatcaagaagtaaaagacacttcaaaaatcataaacaga 804
Query: 604 acatattcagtcaggaggttcacaactgttattgcagtaacatctttcaccctcagtttc 663
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 805 acattttcagtcaggaggttcacaaccgttattgcagtaacatctttcaccctcagtttc 864
Query: 664 cccatcggcacaacaggaagatgatggcttccctgccc 701
||||| ||||||||||||||||||||||||||||||||
Sbjct: 865 cccataggcacaacaggaagatgatggcttccctgccc 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1102
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1092
Effective search space: 754572
Effective search space used: 754572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no303_m01.g1 MSMg01no303_m01.g1 CHROMAT_FILE:
MSMg01no303_m01.g1 PHD_FILE: MSMg01no303_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:45 2005
(663 letters)
>mm_chrX_140308093_140309155
Length = 1063
Score = 1243 bits (643), Expect = 0.0
Identities = 658/663 (99%)
Strand = Plus / Minus
Query: 1 ccctagagtcactccaaggtgaactgatatccttgtcagaactacaagaagattagaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 863 ccctagagtcactccaaggtgaactgatatccttgtcagaactacaagaagattagaaga 804
Query: 61 actacccccacacacattttctccttcttaaggaactcatttgtatgaaaatattacaag 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 actatccccacacacattttctccttcttaaggaactcatttgtatgaaaatattacaag 744
Query: 121 gttgactgtagatagatttcagttgtaggcacttgcctctcagaagtgaagctctaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gttgactgtagatagatttcagttgtaggcacttgcctctcagaagtgaagctctaggtt 684
Query: 181 ctacccacaaatattgcaagattgggtaaataaatgtgttttccaacagggaagacctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctacccacaaatattgcaagattgggtaaataaatgtgttttccaacagggaagacctgt 624
Query: 241 ctcccattttatttagatactttacaactgtgtaatttccaagacacagtaggaattgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 623 ctcccattttatttagatactttacaactgtgtaatttccaagacacagtaggaactgga 564
Query: 301 tttaaaattcacatttcatcttgtaaatctacagtatctcaccatctatgattgaatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttaaaattcacatttcatcttgtaaatctacagtatctcaccatctatgattgaatttg 504
Query: 361 gcttgagaaccaactcaatgaaatgaatccctgaaggactatttctgggttctcagacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcttgagaaccaactcaatgaaatgaatccctgaaggactatttctgggttctcagacct 444
Query: 421 tgctttcttgatggatgagtctgggaagaggaacaaaagcatttatttatatttagcagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 443 tgctttcttgatggatgagtctgggaagaggaacaaaagcatttatttatatttaacagg 384
Query: 481 agcaattaaccaaagcaatccaggcacagcacccaagggcacattggaatggttgtgtga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agcaattaaccaaagcaatccaggcacagcacccaagggcacattggaatggttgtgtga 324
Query: 541 aaaccataggtctgtcttttggctttgttctgaaataagtcttagccaccttggctcctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaccataggtctgtcttttggctttgttctgaaataagtcttagccaccttggctcctc 264
Query: 601 ttagatagctttctaaaagtgtctctatgcaagtacagaggaaacgggaactatttaaac 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttagatagctttctaaaaatgtctctatgcaagtacagaggaaacgggaactatttaaac 204
Query: 661 cag 663
|||
Sbjct: 203 cag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
