BAC Information

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BAC

Clone NameMSMg01-304P23
ChromosomeX (Build37)
Map Location 76,426,260 - 76,426,734
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337
Downstream geneEG629116, LOC636082, EG667736, LOC100041373, EG636104, 2410003J06Rik, LOC667749, LOC211702, LOC667755, LOC211705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304P23.T7 (MSMg01no304_p23.b1)MSMg01-304P23.TJ (MSMg01no304_p23.g1)
ACCAG430109AG430110
length1,2671,253
length of high quality
(start - end)		454 (91 - 544)479 (79 - 557)
definitionCHROMAT_FILE: MSMg01no304_p23.b1 PHD_FILE: MSMg01no304_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:22 2005CHROMAT_FILE: MSMg01no304_p23.g1 PHD_FILE: MSMg01no304_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGCGTTNNNNNAAATCATTGGGCGCATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGATCTGTCCAGACCTTTATCATGAGTGTGTGTTGG
ATTTTGTGAAATGCTTTCTCTTCATCTAACTAGATGATCATGTTGTTTTT
GTCTTTGAGTTTGTTTATACAGCGGATTACATTGATGGATTTCCATATAT
TAAACCATCCCTGCATCCCTGGAATGAAACCTACTAGGTCAGGATGGATG
ATTGTTTTGATGTGTTCTTGGATTTGGCCAGGGAGAATTTTATTGAGTAT
TTTTGCATAGATATTCATAAGGGAAATTGGTCCCACGTTCTCTATCTGTG
TTGGGTCTTTCTGTGGCTTTGGTATCAGAGTAATTGTGGCTTCATAGAAT
GAGTTGGTTATAGTACCTTCTGCTTCTATTTTGTGGAATAGTTTGTGAAC
AACTGGAATTATATCTTCTTTGAAGGTCTGGTATAACTCTACACTATACC
CATTTGGTCCTGGGCTTTTTTTGGTTGGGAGATTATTAATGACTTCTTCC
CTTTCTTTANGNNATAAAGGACTGGTTAAATCTTTTACCTGATTCCGACT
TAAGTTTGCCACCTGGTATCTGTCTATATCCTTGACCCTTTCATCCTGGG
TTTCCCGTTTTGAAAAGTACCCCCTTCTCTAAATTATCCCGTACTACTTT
TGTTCTTTCATTTATCCTTGTTTCTTATTTTCTTTCTCTCTCTTGTTTCC
ACTCTTCTCTTTTCTCCACTGCATTTCTTTTTCTTTTTCCTATCATATTT
ACTTCTTCTTTTTTCCCCCACTTCCTTCCCTCTCTCCTTTTTCTTACAAA
TCTTCTCTTTGCCTTCTTTCATCTTTTTCTTTACCCTCTTCTTTTTTTAT
TTTCTTTCTTTCCTTTTCTCTCACACTCTTCACTCTTTTTTTTCTCCTTA
TTTTCTCTCCTTTCTCTCTCTACCATATATAACTTTCTTGCACTTCTCTT
TCTAACTCCTTCTCCTCTCCTCTTCTTTTTTTCCTACTCTTTTCTTTTTC
ATTTCTTCTCCTTTTCATATCTCTATCTCTTATTCTTGTCTTCTCCTTTT
TCTCCTACTACTCCCTCCTATTCTATTACTATCCCTCCTTATTTTCTTAT
ATTTCATTACTCTTCCTTTCTTTTCTTCCTTTCTCTTTCTACTCATTTAT
ATCATTTCTTCTTTCTTACTTAATCTTCTAAATCCTTTACTAATCCACTT
CCTCTCTCCTTTCTATT

NNCCCTCTCTTTTNNNAAAGGATGGAGCCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTACATCCACCCCCATCCTG
ACGGAGGTCGGATTCCACATTGACCCCCTTTCTCCTGCGGAATGTATTCC
AGGGTTGCAGCCTGCGGCCCTTTCGCAGCCACTAGGTCCACATGGGCCAC
AGTGGTGGCTGCCAGAAAACCGGTCTCAAACACTCTCAGTGGCGCCACAC
TTAGACAACAGACAACATACAAGACTCACACAAACGTACCTCCAAGGGGA
CTTTGGGGTTCCTGGGTGTCATGCATATCTCGGTGGGACCTCCAAATGAA
AGAGCTCTGTGGGGATACCCCCACGCTAGTCACAAGACAGTGCGCACCCA
AAGAAACACGAGAGAACATCTTGATGCAAACACATGAGGTAGTTTAATGA
CAAAGCTCTGGACCAACATGTATCTAATACTAGAGACAGAGGTGTCAACC
ACGAGGCTCAAAAGTTAGGGTTTTATATAGAAAAAGAGTGGGGGTAGGGG
AAGAAGTGNCNTGNNTTCNCNTAATTGGNCNGTTTAANCTTCNGNNNACT
GTATGTGCAGATCAAGGTAACAGCAGAGCATCTGGTTAACATTTAACCCA
TGTCAGAAGGGTGCGAGATAAGGAGGTGTTGTCCCTGCCCACACATGCTT
TGCTGTCCTCCCCATCCCTAAGACTAGTCCTCTCCTGTTATAAATCTTCC
GCCCTTTCTCCCTATTCTTATTATTTCTACATCCTCTTTCTTTATTTTCT
TCTCTCACTCTTCCAACCTACTCTTCTTATCTTCTCTCCTCTTATCCTTT
TTCTTTTATTTCCCCCTTCCCTTTTCTATATCTTTTTTCTCCTTTTTACC
CTATCTTTCTCCTTTCCTCTTTCTACCCCACTATTCCATTTTTCCTCTCC
ATTTCTTTTTTCTCTTCTTCTTTTCCTTATTTTACCCACATATCTTCTAC
ACCCCTTTTTACTACAATCCTCTACTTTTTCTCTTATCTACTTATGCACT
TAACTATCTATTTCATTCCCCAACTCTTTTTTTCTCTTGTTCCATCCACC
TTCTCAATTCTCTTACATAATTTCTACCCTCATTCATTCCCCATTTCTCC
ACTATTATATACTCCTCCTCTTAATCCTCTCTCTTCTCATTTTTATTACT
CACATTATTTTACTACTTTTTCACACTTCCAATTATTTCTTTCATCTCCA
ACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_p23.g1 MSMg01no304_p23.g1 CHROMAT_FILE:
MSMg01no304_p23.g1 PHD_FILE: MSMg01no304_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:22 2005
         (479 letters)



>mm_chrX_76426056_76426934
          Length = 879

 Score =  872 bits (451), Expect = 0.0
 Identities = 469/475 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   acatccacccccatcctgacggaggtcggattccacattgaccccctttctcctgcggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 acatccacccccatcctgacggaggtcggattccacattgaccccctttctcctgtggaa 264

                                                                       
Query: 65  tgtattccagggttgcagcctgcggccctttcgcagccactaggtccacatgggccacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tgtattccagggttgcagcctgcggccctttcgcagccactaggtccgcatgggccacag 324

                                                                       
Query: 125 tggtggctgccagaaaaccggtctcaaacactctcagtggcgccacacttagacaacaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtggctgccagaaaaccggtctcaaacactctcagtggcgccacacttagacaacaga 384

                                                                       
Query: 185 caacatacaagactcacacaaacgtacctccaaggggactttggggttcctgggtgtcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caacatacaagactcacacaaacgtacctccaaggggactttggggttcctgggtgtcat 444

                                                                       
Query: 245 gcatatctcggtgggacctccaaatgaaagagctctgtggggatacccccacgctagtca 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcatatctcggtgggacctccagatgaaagagctctgtggggatacccccacgctagtca 504

                                                                       
Query: 305 caagacagtgcgcacccaaagaaacacgagagaacatcttgatgcaaacacatgaggtag 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 505 caagacagtgcgcacccaaagaaacacgagagaacatcttgatgcaaacatacgaggtag 564

                                                                       
Query: 365 tttaatgacaaagctctggaccaacatgtatctaatactagagacagaggtgtcaaccac 424
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 tttaatgacaaagctctggaccaacatgtatctaatactaaagacagaggtgtcaaccac 624

                                                                  
Query: 425 gaggctcaaaagttagggttttatatagaaaaagagtgggggtaggggaagaagt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaggctcaaaagttagggttttatatagaaaaagagtgggggtaggggaagaagt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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