TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAAAATTTTCGTTTTTAAAAATGTTAAGGCAGATCCTCAAGTC
ACCTAGGTGGGGTTGAATTATCTGTGTAGCAGAGGATGTCTATGACCTCC
TCATCCTCTTGCTTCCACTTTCCCAGAGCTGGAATTTCAGGCTTGCACCA
GCATGTTAAGTTTATGTGGTGTTAGGGACCAGTCCAGGGCTTTGTGCACG
TTATGCAAGCACCCTAGCGCCTGGGCTCCGTTCCTAGCCCGTGACTACCT
TTTGACTTATTGTAAGTCTCACTCTGGCTAGACCTCAGATTCCAAGCATG
CAGTCAAGGGTTGTAAGAAACTAGCTCCTTCCTCATAGAGGATGTAGACC
AGAGAGTGCTTCATTTACACGTGCTTCTTGGTCAACTATTGTGAAGTAAA
GAACCAGGCTAGCAGACCCTCATAGAGGGTTGAACATTTTCCGTCGGAAA
GGAGAATACAATTTTAGTTATTGTCACTTGTGACAAGGTCTTCCCATGCA
GTACAGGCTGGTGTGAAGCTCAATATAAATCCTAGGCTGACCTCAAACTT
AAAGCAATCCTCTAGCCTCAGCCATCCAAATACTGAAGATCCAGCATGCA
TTACCAGATTCACCTGCAATATAATTTAATACACTAAAAATTGTTCTACT
CCTTTGGTGGTGGTTTAGTCCCTGGGAGCCCTGTGGGT

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAAATATCTGGTTACCAGTGATTGCTAAATACTCT
TGTTTTTATATTGGACCTCCGCCCTTTGTTAACTATTGCCTGAAGCTAAG
AGATTGAGAGTTGTCTGTCCTTTTACCTGTGGGCTCTTTGAACCACTATA
TTTCTGTTTTCTAACATCGCAATTCCAGGAAGAATCTACCTGAGCTAGTC
TAGAAGTAGTTATTAATGGATATGGAAATGTTTTGTGCAAAATAAACTTT
TTGTAGTTTGACAGGTTGGTGCTTTATACTATCTGGTTTAACTTCTTAAA
ATTTTGATCATTATTTTTATACACCCCCCCCCCCACAGTAGAGTTGTTCT
CTTGTTGCTCTAAGCACTGGAAGATATTAATGTTGACTTATATTTAGGAG
GAGATTCAGTGAGGAACATTCAGGGTAGTTGTCTTTTTGGTGCGATGAGT
TTAATATAAGTGTTAGCATTTTAAAAGTTGCAATGTACATGAAGCTTAAG
AAAGCAAGCTCAAAACTCGAACATTTTGATCAAATTTGATGGAGTTTTGA
GGGAAATGAAACTTTAAGATGGCACTCTAGTTGTGCAGCGACTAATGATC
TTATTGAAGAAAAGACAAGTCATTTGACTATAAATTGATTTAACCAGACC
AGTCACAACCAATCAGTGACTCTTTT

Query= MSMg01no306_c05.b1 MSMg01no306_c05.b1 CHROMAT_FILE:
MSMg01no306_c05.b1 PHD_FILE: MSMg01no306_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:49 2005
         (621 letters)



>mm_chrX_48327307_48328327
          Length = 1021

 Score = 1178 bits (609), Expect = 0.0
 Identities = 615/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaaaattttcgtttttaaaaatgttaaggcagatcctcaagtcacctaggtg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaaaatttttgtttttaaaaatgttaaggcagatcctcaagtcacctaggtg 264

                                                                       
Query: 65  gggttgaattatctgtgtagcagaggatgtctatgacctcctcatcctcttgcttccact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggttgaattatctgtgtagcagaggatgtctatgacctcctcatcctcttgcttccact 324

                                                                       
Query: 125 ttcccagagctggaatttcaggcttgcaccagcatgttaagtttatgtggtgttagggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcccagagctggaatttcaggcttgcaccagcatgttaagtttatgtggtgttagggac 384

                                                                       
Query: 185 cagtccagggctttgtgcacgttatgcaagcaccctagcgcctgggctccgttcctagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtccagggctttgtgcacgttatgcaagcaccctagcgcctgggctccgttcctagcc 444

                                                                       
Query: 245 cgtgactaccttttgacttattgtaagtctcactctggctagacctcagattccaagcat 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgtaactaccttttgacttattgtaagtctcactctggctagacctcagattccaagcat 504

                                                                       
Query: 305 gcagtcaagggttgtaagaaactagctccttcctcatagaggatgtagaccagagagtgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagtcaagggttgtaagaaactagctccttcctcatagaggatgtagaccagagagtgc 564

                                                                       
Query: 365 ttcatttacacgtgcttcttggtcaactattgtgaagtaaagaaccaggctagcagaccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcatttacacgtgcttcttggtcaactattgtgaagtaaagaaccaggctagcagaccc 624

                                                                       
Query: 425 tcatagagggttgaacattttccgtcggaaaggagaatacaattttagttattgtcactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcatagagggttgaacattttccgtcggaaaggagaatacaattttagttattgtcactt 684

                                                                       
Query: 485 gtgacaaggtcttcccatgcagtacaggctggtgtgaagctcaatataaatcctaggctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgacaaggtcttcccatgcagtacaggctggtgtgaagctcaatataaatcctaggctg 744

                                                                       
Query: 545 acctcaaacttaaagcaatcctctagcctcagccatccaaatactgaagatccagcatgc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acctcaaacttaaagcaatcctctagcctcagccatccaaatactgaagatccagcatgc 804

                            
Query: 605 attaccagattcacctg 621
           |||||||||||||||||
Sbjct: 805 attaccagattcacctg 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_c05.g1 MSMg01no306_c05.g1 CHROMAT_FILE:
MSMg01no306_c05.g1 PHD_FILE: MSMg01no306_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:49 2005
         (288 letters)



>mm_chrX_48471465_48472152
          Length = 688

 Score =  493 bits (255), Expect = e-144
 Identities = 279/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttaccagtgattgctaaatactcttgtttttatattggacctccgccctttgttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 487 tggttaccagtgattgctaaatactcttgtttttatattggacctccgccctttgttgac 428

                                                                       
Query: 61  tattgcctgaagctaagagattgagagttgtctgtccttttacctgtgggctctttgaac 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tattgcctggagctaagagattgagagttgtctgtccttttacctgtgggctctttgaac 368

                                                                       
Query: 121 cactatatttctgttttctaacatcgcaattccaggaagaatctacctgagctagtctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cactatatttctgttttctaacatcgcaattccaggaagaatctacctgagctagtctag 308

                                                                       
Query: 181 aagtagttattaatggatatggaaatgttttgtgcaaaataaactttttgtagtttgaca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atgtagttattaatggatatggaaatgttttgtgcaaaataaactttttgtagtttgaca 248

                                                          
Query: 241 ggttggtgctttatactatctggtttaacttcttaaaattttgatca 287
             |||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 247 ctttggtgcaacatactatctggtttaacttcttaaaattttgatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)