BAC Information

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BAC

Clone NameMSMg01-306K12
ChromosomeX (Build37)
Map Location 63,671,813 - 63,672,139
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671840
Downstream geneSlitrk2, LOC666824, LOC627734, EG666828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306K12.T7 (MSMg01no306_k12.b1)MSMg01-306K12.TJ (MSMg01no306_k12.g1)
ACCAG431254AG431255
length769768
length of high quality
(start - end)
335 (46 - 380)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no306_k12.b1 PHD_FILE: MSMg01no306_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:31 2005CHROMAT_FILE: MSMg01no306_k12.g1 PHD_FILE: MSMg01no306_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGGAGGTTTGATACTGCATTGTCAGTGAGGCAAACTAAATACC
AAAAAATTGAGGATTTAGAGTTTTGACCAAATTCAGCTCTAGAATAATCT
TCAGATAAAATAATTTCTTTACACTAAGCAGTAATATGTTCAAAATGAAG
TCCATGTAAATGTCACACATTACAACAAATATTCACTTGGTAACTAACTA
CCAATATGCATACTCTAATATGAAATATTTCTTCTTCAGATGGTTTAAGA
TTTCTCTAAACCAACTACCAAATTTCCACTTGTTTCTCTCCCTAACAGAG
TCTGCTTTTGCTATTTAAGTTATTTTTAACCACAAGAACAGCCTTTTAAA
CACTGTATACTAAATATATGTGTGGGATAACTATTTAAATTATGTATGTA
GATGGGTAATGTAAATTTATAAATACTTTATAATTTTTAAAGTATTTTCA
GATTTACAAGACATCTACAAGTGTAATTCTTCTGTTACTTTTCATTGTCT
AGGTTTGAAAAAGTCTATGTTGCTTTTTGTTCCAATTTCAATTAGGCAAA
GATAGATTTTTTCCCAGATATCATGTAAAACAAAATATATGATAGATAAA
AATTAACTTTTCATGTACCCAAACTCAATATCTACAATCTATCTAATGAG
TGTTTCAGAGATACNAAGAAAGATTGAATAATAGATAGACTATTAATCTT
TCCTGATAAGTTTCATGAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCA
AGAATGGGTGTTGGATCTTGTCCAATGCTTTTTCCACATCTATGGAGATG
ATCATGTGGTTCTTGTCTTTGAGTTTGTTTATATAATGGATTACACTGAT
GGATTTTCGTATGTTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTTGGTTAGCGAGA
ATTTTATTGAGGATTTTTGCATCAATATTCATAAGGGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGTTTTGTTCTGCGCCCCCCCCATCAGAGTAATTG
TGGCTTCATAGAATGAGTTGGGTAGATTTCCCTCTACATCTATTTTGTGG
AATAGTTCGTGCAGAACTGGGATTTGATCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTAT
TAATGACTGCTTCTATTTCTTTAGGGGATATAGGACTGTTTAGATCATTA
ACCTGATCTTGATTTAGCTTTGGTACTTGGTATCCGTCTAGAAACTTGTC
CATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAAAAGG
ATCTGATGGTGTTCTGGATTTCTTCAGGATCTGTTGCTATGCTTCCCTTT
TCATTTCAGATTTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_k12.b1 MSMg01no306_k12.b1 CHROMAT_FILE:
MSMg01no306_k12.b1 PHD_FILE: MSMg01no306_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:31 2005
         (335 letters)



>mm_chrX_63671609_63672343
          Length = 735

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaggaggtttgatactgcattgtcagtgaggcaaactaaataccaaaaaattg 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggaggtttgatactgcattgtcagtgaggcaaactaaataccaaaaaattg 264

                                                                       
Query: 65  aggatttagagttttgaccaaattcagctctagaataatcttcagataaaataatttctt 124
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggatttagagttttgaataaattcagctctagaataatcttcagataaaataatttctt 324

                                                                       
Query: 125 tacactaagcagtaatatgttcaaaatgaagtccatgtaaatgtcacacattacaacaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacactaagcagtaatatgttcaaaatgaagtccatgtaaatgtcacacattacaacaaa 384

                                                                       
Query: 185 tattcacttggtaactaactaccaatatgcatactctaatatgaaatatttcttcttcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattcacttggtaactaactaccaatatgcatactctaatatgaaatatttcttcttcag 444

                                                                       
Query: 245 atggtttaagatttctctaaaccaactaccaaatttccacttgtttctctccctaacaga 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 atggtttaagatttctctaaaccaactaccaaatttccacttgtttctctacctaacaga 504

                                      
Query: 305 gtctgcttttgctatttaagttatttt 331
           |||||||||||||||||||| ||||||
Sbjct: 505 gtctgcttttgctatttaagctatttt 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)