BAC Information

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BAC

Clone NameMSMg01-307F07
ChromosomeX (Build37)
Map Location 139,642,730 - 139,812,675
singlet/doubletdoublet
Overlap geneChrdl1
Upstream geneLOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541
Downstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307F07.T7 (MSMg01no307_f07.b1)MSMg01-307F07.TJ (MSMg01no307_f07.g1)
ACCAG431729AG431730
length764772
length of high quality
(start - end)
184 (128 - 311)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no307_f07.b1 PHD_FILE: MSMg01no307_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:21 2005CHROMAT_FILE: MSMg01no307_f07.g1 PHD_FILE: MSMg01no307_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,812,492 - 139,812,675)(139,642,730 - 139,642,976)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCT
TAAAATTTTTCGTTAATTGAGGAACTGGAGACATGAATCAGTGGTTAAAA
ACTTTTGCTGTTTTTGTCCAGTACAGGAGTTTGGTTCTCAGCATATCCAT
GGTGTGCCATAGTACTAGCTGTAATTCCAGGTCCACCGGACTTGGCAATC
TCTTTTGGCCTCACCTGTGTATTGCATGTGCATACACACTTAAATGAAAA
TAATATTTAATTAATAAATTATTTTAAAGAATAATTTACCACAGTCAGGT
GGGATTTATTGCTTTTTTTTAAATGTGTTCCAACATTCAAAAAAAGTCAA
TTAATGTATTTTTATTTATCCCCCCCCCCCCCACAATAAACACATGATAT
TATCAAAAGATGCCCCCCCCGCATATAAGATATAAAAAAATACTATTTAG
GAAGCTAGAGGCACAGAATAATTTCTTCATCTTGACTGAGGACAGCTTTT
ATCATGAACGTGAGACACTGTACGCTTTACCATTTATGTCCCGAATAAGA
AAACCCAATCCACTCTGACTTTTAAACTTTACCTTTTAGCAGAAGTCTTA
GATAACGGATAACTCATGTATGCATACTGAAAGAGATAAAACTACTTTTT
TTCACAGATGACATAATTATTCATATTACTATTTCCCCCTTTGTACTGGA
GAGACAATCTAGTGATTAACAGAATTTATTGCTCTTTGCAAAGACCCCAA
TTTTGTTCACAGCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAGACATACCCAGTTTTATT
AACTGATTTCATGTTAACAGAACACACCAAGAATAGACAGGAACCAATAA
GAAAATGCTCATCCAAGAATAAGAAATGTTGGTAAAATAGGTTTTTTAAG
ACACATAGCAAAACTGTTAACTAATAATGTTTATTTTCAAATTACTTAGG
GAATGGATTTCTAATGTTTTCAGTATCAGAGATAAGTACCTGCAGATATG
TTTATCATTCAGCAATGTATATATGTATCAATATATTTTATCCCTCCCCA
TAANANAGAAATTTTNGTTTATGCCTTGTCTTTGCCCCCGGTAACTGGGA
NAAANTTATTTTTTCCCCCCCTTACAAAGTGCAGNCCGATGACGTTGTCG
GGGTGCTTGTGGTTTTAGTATACCTAATGTACAAAAACATACCAGGCATG
GCCTATTTGTGCAGTATTACCTTTTTAGGGGAGACAAGGTCTACTCTGGT
TCACAATTTGAGGGTACATATCCCTATCTTAATAAACTACCACTGGCAGG
AATCTGAGGCCGTCGGATGTTTTGCCTTTATTGTTCAGAGACAATTTTTT
CACCCCAATTTTACTTTATCCACCGGTTATTAATGTATTTTGCATTCCCA
CTCTTTCCTGAGTTATCCTCTGCAAATTTAACTCTTTTCTCACAAATGAT
CTTTTTTCTCCCACCTCCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_f07.b1 MSMg01no307_f07.b1 CHROMAT_FILE:
MSMg01no307_f07.b1 PHD_FILE: MSMg01no307_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:21 2005
         (184 letters)



>mm_chrX_139812357_139812940
          Length = 584

 Score =  340 bits (176), Expect = 2e-98
 Identities = 182/184 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttggttctcagcatatccatggtgtgccatagtactagctgtaattccaggtccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtttggttctcagcatatccatggtgtgccatagtactagctgtaattccaggtccacc 260

                                                                       
Query: 61  ggacttggcaatctcttttggcctcacctgtgtattgcatgtgcatacacacttaaatga 120
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 ggacttggcaatcacttttggcctcacctgtgtattgcatgtgcacacacacttaaatga 200

                                                                       
Query: 121 aaataatatttaattaataaattattttaaagaataatttaccacagtcaggtgggattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaataatatttaattaataaattattttaaagaataatttaccacagtcaggtgggattt 140

               
Query: 181 attg 184
           ||||
Sbjct: 139 attg 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no307_f07.g1 MSMg01no307_f07.g1 CHROMAT_FILE:
MSMg01no307_f07.g1 PHD_FILE: MSMg01no307_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:21 2005
         (247 letters)



>mm_chrX_139642530_139643176
          Length = 647

 Score =  424 bits (219), Expect = e-123
 Identities = 240/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagagacatacccagttttattaactgatttcatgttaacagaacacaccaagaatag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||
Sbjct: 201 agaagagacatacccagttttattaactgatttcatgttaacagaacagagtaagaatag 260

                                                                       
Query: 61  acaggaaccaataagaaaatgctcatccaagaataagaaatgttggtaaaataggttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggaaccaataagaaaatgctcatccaagaataagaaatgttggtaaaataggttttt 320

                                                                       
Query: 121 taagacacatagcaaaactgttaactaataatgtttattttcaaattacttagggaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |
Sbjct: 321 taagacacatagcaaaactgttaactaataatgtttattttcaaattacttaaagaatag 380

                                                                       
Query: 181 atttctaatgttttcagtatcagagataagtacctgcagatatgtttatcattcagcaat 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctaatcttttcagtatcagagataagtacctgcagatatgtttatcattcagcaat 440

                  
Query: 241 gtatata 247
           |||||||
Sbjct: 441 gtatata 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)