BAC Information

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BAC

Clone NameMSMg01-308C16
ChromosomeX (Build37)
Map Location 139,183,202 - 139,306,691
singlet/doubletdoublet
Overlap geneTmem164, Ammecr1
Upstream geneLOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235
Downstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C16.T7 (MSMg01no308_c16.b1)MSMg01-308C16.TJ (MSMg01no308_c16.g1)
ACCAG432320AG432321
length737748
length of high quality
(start - end)
370 (46 - 415)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no308_c16.b1 PHD_FILE: MSMg01no308_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:25 2005CHROMAT_FILE: MSMg01no308_c16.g1 PHD_FILE: MSMg01no308_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,306,327 - 139,306,691)(139,183,202 - 139,183,447)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTTGTTAACCATGAAATAGAGCTATCAAAGCCTCTATTTCATT
ACTGCACCATTTCCTCCCTTAAGCCAGTATTTTACATGTAAATGTAAGTG
CAACAGTTGCGGTAGGGAGATATTATTCCTTTTATAAATGGTATTTTGCT
TTACAGAAGGACACAGTATACTTTCTTTATTGCCTTCCTCATAATTTCAA
GATTAATCTATTTTCATAGATTCCAGCCCCTTATAACTGTTCAGAATCAA
ATCTCTTTTGTAAACTAAGCTAACTCGTATTGAGTCACATACTCAATGTA
CATTTAGAACTTGGATAAGATTTTTCTTAGCTTATCAGGCAGACATTCCC
TACAGAAACTTGTTCACCCCCCCACGCCCTCTCCACCCAGCATTTGAAGA
GTAAACTAAGCTCAAAAATATAAATTACTTCACTTCCCTCCTATTTAAAT
TCATCTCCTTTGTCATTTCTTTTTTAAAAATGGTAGGAACGCATTTCTAT
AACATTTGATGATAAGCAGGCTTTTTATTAAATGCCACCTATGTTGTCTG
AACTTTGCATTGTAAGCTTCAGTGCGTTCAATTTTTCTGAATGCGTATTA
TAATTAGTCTATATGAAGTGCTTTTCCCATAATTACACTCTGAGCTGTCA
TTTGCTCACTGTAAACTTTTGAGTAAGAACTTTTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTTATAAGGCTTTGTGAATCA
CATGTAACCACCAGACCTCGGGCTGAGATGAGTTTGAGCTAAAATGAGCT
TGTGTGGGCATTGCTGGATCTGTGTGGTGGGCTGTCCTGTTGGGTGTGTT
TTGATATATCTCATGGTGATCAAAATAGATCTCACGAATGTATGGTAGTA
CTGGCATAAAACTATTGGGGTGTTCTCTGTGTGAACACAGTGACCAGGCA
GGCCTATAGGGGCAGAATGAGCTGTTTTTTGCAAGTACATTGAATTCGAG
TTTTTATTAGAAATTCNNNTTTCGCTTCCANANCCATNNCCCCAATTGTT
TGTTAAATAANNTTGGACCCACCCCCCCCCCCTCTATAAGNTAATCTAAA
AAGTAGGGGGGGCGGCTTGCTCTCCAGTTTTGCTCTTTGCTTCAGGGGCT
GAGCTGTTTGGAATATGCATAGAGAGTCTGTGCTGATATATGTTGGCATC
TGTTCTCATGCCTCATCTTTTGTGTTTGTACTTCTAGGTGTCTTCTGTTT
GCAGCTTACCAAATGCTTTAGTTCTCCATCTGCCATTGTTCCCATACGCT
GCTACAAATTTCGACCCGTCTGCCACCTTCTATTGAAGTAACCCAGCTCC
GACCCCCTTAGGTTACGCCCTCTTGCCTTTATTAGCCCAACATGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c16.b1 MSMg01no308_c16.b1 CHROMAT_FILE:
MSMg01no308_c16.b1 PHD_FILE: MSMg01no308_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:25 2005
         (370 letters)



>mm_chrX_139306123_139306892
          Length = 770

 Score =  667 bits (345), Expect = 0.0
 Identities = 360/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctttgttaaccatgaaatagagctatcaaagcctctatttcattactgcacca 64
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctctttggtaacaatgaaatagagctatcaaagcctctatttcattactgcacca 510

                                                                       
Query: 65  tttcctcccttaagccagtattttacatgtaaatgtaagtgcaacagttgcggtagggag 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttcctcccttaagtcagtattttacatgtaaatgtaagtgcaacagttgcggtagggag 450

                                                                       
Query: 125 atattattccttttataaatggtattttgctttacagaaggacacagtatactttcttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atattattccttttataaatggtattttgctttacagaaggacacagtatactttcttta 390

                                                                       
Query: 185 ttgccttcctcataatttcaagattaatctattttcatagattccagccccttataactg 244
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 389 ttgccttcctcataatttcaagattaatctattttcataaatcccagccccttataactg 330

                                                                       
Query: 245 ttcagaatcaaatctcttttgtaaactaagctaactcgtattgagtcacatactcaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcagaatcaaatctcttttgtaaactaagctaactcgtattgagtcacatactcaatgt 270

                                                                       
Query: 305 acatttagaacttggataagatttttcttagcttatcaggcagacattccctacagaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acatttagaacttggataagatttttcttagcttatcaggcagacattccctacagaaac 210

                
Query: 365 ttgtt 369
           |||||
Sbjct: 209 ttgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no308_c16.g1 MSMg01no308_c16.g1 CHROMAT_FILE:
MSMg01no308_c16.g1 PHD_FILE: MSMg01no308_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:25 2005
         (249 letters)



>mm_chrX_139183002_139183650
          Length = 649

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttataaggctttgtgaatcacatgtaaccaccagacctcgggctgagatgagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttataaggctttgtgaatcacatgtaaccaccagacctcgggctgagatgagtttg 260

                                                                       
Query: 61  agctaaaatgagcttgtgtgggcattgctggatctgtgtggtgggctgtcctgttgggtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 agctaaaatgagcttgtgtgggcattgctggatctgtgtggtgggctgccctgttgggtg 320

                                                                       
Query: 121 tgttttgatatatctcatggtgatcaaaatagatctcacgaatgtatggtagtactggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttgatatatctcatggtgatcaaaatagatctcacgaatgtatggtagtactggca 380

                                                                       
Query: 181 taaaactattggggtgttctctgtgtgaacacagtgaccaggcaggcctataggggcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaactattggggtgttctctgtgtgaacacagtgaccaggcaggcctataggggcaga 440

                 
Query: 241 atgagc 246
           ||||||
Sbjct: 441 atgagc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)