Query= MSMg01no308_j18.b1 MSMg01no308_j18.b1 CHROMAT_FILE:
MSMg01no308_j18.b1 PHD_FILE: MSMg01no308_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:58 2005
(666 letters)
>mm_chrX_136275904_136276968
Length = 1065
Score = 951 bits (492), Expect = 0.0
Identities = 501/504 (99%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 5 gaattcactaccagtttccctctcccaggagaaaatggttttttattcctttttttcttt 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 gaattcactaccagtttccctctcccaggagaaaatggttttttatttctttttttcttt 444
Query: 65 ttaaatctacacatcaattttttactgcagctcttttcatagtagccaagttagttcttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaaatctacacatcaattttttactgcagctcttttcatagtagccaagttagttcttg 384
Query: 125 atagtttgacctgttgaattaaccttgtgtttctgataaaaatattatttgactttagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atagtttgacctgttgaattaaccttgtgtttctgataaaaatattatttgactttagtg 324
Query: 185 caatcactatatagtgttagactattaacactttgttaattagttgaaaaagtaaaatac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caatcactatatagtgttagactattaacactttgttaattagttgaaaaagtaaaatac 264
Query: 245 atttttactataataaaaaaatatcacaaataaacgtcaacgagaagaaaattataacta 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atttttactataataaaaaaa-atcacaaataaacgtcaacgagaagaaaattataacta 205
Query: 305 ctgacaaaatggctcagtggataaagacacttgctaccaagcctgacgacctgagctcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctgacaaaatggctcagtggataaagacacttgctaccaagcctgacgacctgagctcaa 145
Query: 365 tcgcaggaagccatgctgatagaagcaaatgtcataacgtgtcctctggcttccataggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcgcaggaagccatgctgatagaagcaaatgtcataacgtgtcctctggcttccataggg 85
Query: 425 atgttacagcacatgggtgcaccctccaacaaataaatatgataaagaactaaaagggca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 atgttacagcacatgggtgcaccctccaacaaataaatatgataaagaactaaaagggca 25
Query: 485 atatatgaagatgagtatggaagt 508
|||||| |||||||||||||||||
Sbjct: 24 atatataaagatgagtatggaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_j18.g1 MSMg01no308_j18.g1 CHROMAT_FILE:
MSMg01no308_j18.g1 PHD_FILE: MSMg01no308_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:59 2005
(617 letters)
>mm_chrX_136246449_136247465
Length = 1017
Score = 1185 bits (613), Expect = 0.0
Identities = 617/619 (99%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 1 attgaagagcagaccacttaatggttaatttttctgctttctatcttatataggttaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attgaagagcagaccacttaatggttaatttttctgctttctatcttatataggttaaac 258
Query: 61 actattggtgtatttgtactttagaattcatcccttgagcccctccctccctttttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actattggtgtatttgtactttagaattcatcccttgagcccctccctccctttttttct 318
Query: 121 tttcttt--tttttttttttccacagaggtttggaatatcgagcccacagtgagcaattc 178
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttcttttctttttttttttccacagaggtttggaatatcgagcccacagtgagcaattc 378
Query: 179 aaagccttttttaggctacccaaagaagagacattgaaagaagtacatgagtgtttctta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaagccttttttaggctacccaaagaagagacattgaaagaagtacatgagtgtttctta 438
Query: 239 tgggtaccattcagccacttcagtagtcacggaaaaatgtgcatttcagaaaactatatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgggtaccattcagccacttcagtagtcacggaaaaatgtgcatttcagaaaactatatt 498
Query: 299 tgctttgctagccaggatgggaatctatgcagtgtaatcattccattacgagaggtaata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgctttgctagccaggatgggaatctatgcagtgtaatcattccattacgagaggtaata 558
Query: 359 tcaatttgggtacatataagtttttaatttctagaacaccctctaattctgtgaattagt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcaatttgggtacatataagtttttaatttctagaacaccctctaattctgtgaattagt 618
Query: 419 gaaaaactcaggaaatgtatcgttttagcaatttaaataatcatttgagtacaaaattac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaaaaactcaggaaatgtatcgttttagcaatttaaataatcatttgagtacaaaattac 678
Query: 479 tcttcaagttaaaaatagtagcttatggaatattttaaaattccttttagaaaagctttg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcttcaagttaaaaatagtagcttatggaatattttaaaattccttttagaaaagctttg 738
Query: 539 caaaaagtggggaattttaaaaagtagataaagatttagggcagtagttctcaaccttcc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caaaaagtggggaattttaaaaagtagataaagatttagggcagtagttctcaaccttcc 798
Query: 599 taatgctgtgaccctttaa 617
|||||||||||||||||||
Sbjct: 799 taatgctgtgaccctttaa 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
