BAC Information

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BAC

Clone NameMSMg01-309M22
ChromosomeX (Build37)
Map Location 23,033,013 - 23,033,306
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023I07Rik, Klhl13, EG635719
Downstream geneWdr44, EG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206, LOC669000, LOC629204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309M22.T7 (MSMg01no309_m22.b1)MSMg01-309M22.TJ (MSMg01no309_m22.g1)
ACCAG433489AG433490
length732736
length of high quality
(start - end)
---295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no309_m22.b1 PHD_FILE: MSMg01no309_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:29 2005CHROMAT_FILE: MSMg01no309_m22.g1 PHD_FILE: MSMg01no309_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTTGAAGGGATACACTAAACTAGAGGAATTCATGAGGACCACAG
GAAGAGATGGGGAAACAGGATGAATCATTTTTATCTAGGCTCAGAATCTT
CAAGGATGGCCCATTAAAAAAGAAGTCAAAGAGGAAGAAGACAGTGGCAT
TTTTAAAGGGTTAACTGTTTTGCTAGGAGACTAATCTAGGGCAAGAAAAT
ATCCTTAGGCATGTGAATATCAGTATTCTCACCTTATGGAATCACATCCC
ATTATACCCAGTGCCAAATATTCAGTAAGAATTTAAGCTATTGGTGGTAT
TCAGCTTTGTTTCATTTTGTTTACGCACCCACCAATCTTACCATTTATTC
AAAAATGCATAAACCACCACACTTTCATTTGAATCAACAATGAGAAAAAA
AACTTTTTTTATCATATTATATATATATTTTTTTGTTCCAGTGAAGTAAG
GGGAGGCAGCTAATAATTTCAAAAAGTAGGTAATGCTTGCAAGTGTATGC
TCTCTGACTTAAGATATGCAAGACAAAAGCTGTCTACATACCCTTCATTT
TATTGAGAGCAGAACCCCACCAGATACCTTTCAACTAATGTGTATGANAA
CATATATAATCCAAGGAAAAAAGGGAGCATGAACGTTGGAGATGTACCAC
ATCTTCTCAAGTAATCTTCAGGAAGGGCTGGT
CCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACTCGGTATAGCTTGAGCATAGG
AGACTCCAAGGCCTACCCGCACAGCGACACAGTTCCTCCAAGTCCACAGC
TACTCCAACAAGGCCACACGTCCTAATAATGCCATTCCCTGTGGGCTAAG
CATTCAAACACATGTTTCTATGAAGACCAAACATATTGAACCCCACACAA
GAAGTCACAAGATCTTTAAAAAAGAATGTGATATGCAGGCACACTTATGT
GATTCCAGTGTTTATGAAACTACATCATCAGTAGGCATCTTGGAATTGGA
GTTATACATTGTTGTGAGTTGCCTGTTGTGAGTGCTGAGAACATAACACA
CATTCTTTATTATTATTATTACCATTATTATTATTATTATTATTATTATT
ATTATTATTACTATTCAATTATTTTTCTGTGTATCTGTACCTTATATATG
CCTGATGCTGTACAGGTCAGAAGAGGGTGTAGCATCCCCTGTAAGTGTGA
TCACACATGTGGGTGCTAGGAGTTGAACCCAGGTCTTCTGGTAGAGCAAC
CAGTGCTCTTAACCATAGAGCCATCTCTGCAGCCTTAGATATTCTTAAGA
GTTTATCTCTTTCTTCTGATTTACATTTTAACCTTTTATTTGTTCACTTG
TTCAACTTGTAATTGAGTCTTGAATTAAGTACCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_m22.g1 MSMg01no309_m22.g1 CHROMAT_FILE:
MSMg01no309_m22.g1 PHD_FILE: MSMg01no309_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:29 2005
         (295 letters)



>mm_chrX_23032640_23033334
          Length = 695

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacactcggtatagcttgagcataggagactccaaggcctacccgcacagcgacacagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 667 cacactcggtatagcttgagcataggagactccaaggcctacccgcacagtgacacagtt 608

                                                                       
Query: 61  cctccaagtccacagctactccaacaaggccacacgtcctaataatgccattccctgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cctccaagtccacagctactccaacaaggccacacgtcctaataatgccattccctgtgg 548

                                                                       
Query: 121 gctaagcattcaaacacatgtttctatgaagaccaaacatattgaaccccacacaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gctaagcattcaaacacatgtttctatgaagaccaaacatattgaaccccacacaagaag 488

                                                                       
Query: 181 tcacaagatctttaaaaaagaatgtgatatgcaggcacacttatgtgattccagtgttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcacaagatctttaaaaaagaatgtgatatgcaggcacacttatgtgattccagtgttta 428

                                                                 
Query: 241 tgaaactacatcatcagtaggcatcttggaattggagttatacattgttgtgag 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgaaactacatcatcagtaggcatcttggaattggagttatacattgttgtgag 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)