BAC Information

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BAC

Clone NameMSMg01-313A19
ChromosomeX (Build37)
Map Location 53,358,250 - 53,358,617
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A19.T7 (MSMg01no313_a19.b1)MSMg01-313A19.TJ (MSMg01no313_a19.g1)
ACCAG435093AG435094
length1,2111,245
length of high quality
(start - end)
419 (29 - 447)379 (72 - 450)
definitionCHROMAT_FILE: MSMg01no313_a19.b1 PHD_FILE: MSMg01no313_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:18 2005CHROMAT_FILE: MSMg01no313_a19.g1 PHD_FILE: MSMg01no313_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGCATTGGNCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
AAACTCATTTGGTCCCTGGAATGAAGTTAAAGGTCCCTCTGTAGGTTTAG
AGAGGTCAAAAGGCTCTTCCCCGGAAAGGGAAGATCCAAAAGGCTTAGGG
AAGAAAGTGAGGAACTAAGTTGGGCAGAAATTGCAAGTTCCAGAGGTGAG
TCATTGGATATCACATGTCCTGGGGTAGCTGTTGAAAATTTTTGTGCTCC
TCATGCAAATGATGAATATCCTAGAGCCCCCTGGGGAGGCAGCAATGTTT
CTACAGAGCCTGTGTATTTGCTGAAATCCTCAGAGATCCCTGGTCAGATC
TCAAAATCCTTGCTGTATTTTGAGCAGGGTGGTTATATCCCTGACACACT
GGTAAAGATGGTGAGTCTGCTACTGTGTAGTGTGTAGATGTGGAGTGTTT
TTTTATCCCCCCCCCATGTAAAGAAGGACTTGAAAAAAAAAGGGAGGAGG
TAGAATGTTGGGTAGACCTTTGTGGACATGTGGACAGATGTATGGTCCCC
TTGTGCAGAGACCGGGACTCACACCTCCTTGAGCAGAATCAGAAGATCCT
GGAGTCCTTTGTTCTGAGGATGAAAGACCCAGAGGATTATGAGAACATTC
ATAGCATTGTGATGTATTCATCATTGCCTGGGCTGAGATAGAAAGTTTCA
GAGGCCCCTGGGCAGATTGCAAAGGTGCTAGATACCCTTGACCAAATGTG
AAAGTCTTTGCACCTCCTTGGTCAGAACAGGAATGTCTACCAGGCGTTGT
CGATGATGGTGGCAATGTTCCTAGATTTGCTGAAGTATACTGACATATGT
TTCAGCCTGCCCTCATTGTGAATAAAGCCCTACTCCCTCGTGTGCCTCTT
CCAATTGTGCAAATTCCCTGGGGCATCTGTTCATTTTCTCCATTTCTTTG
TTCTGCTACATTCCACCTTCTTCATCCTATTCTCCTCCTTTTCCCCTCAC
CCTCTTTTCTTTTCTTTTTACTTCACTTCTCTTCCCTATCTCCCCTACCT
TCACTCTCCTCTCTACTATATTCATTTTCCTCCACTCTTCTTCTTTGTTC
TACTTCCTTTTCTCTCTTTTTCTCCTTCCTTTTCTATCTTCTATTCCTCA
ACTCTTTCCCCATCTCTTTCTCTCACTCTCTTTCTCCCCCCTCTCTTCTC
TTCTTTTTCTT
NNCCTTCTCAGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTACTCAAAGTCATTGGAGACAACAGCAA
ATCTGTTTTGTCCGAATGGAGAACGGATGAGGATTTGTGCTCCATTAAAA
AGGTCAATAAATTGACTAATTTGATTCCTGCCTGTATATTTGTGTGTGCT
TTGTACTTTTTTCTGCTTTGTGTTGTGCTCTGTGTTCTTGATTATTACCT
CTAGGGTCCTTACCATACTTGCAAAATGAAACATTTCTCAGTTGGAAAAG
CTCTCATTTTTTTCCTCTGTATACAATATGATTCTTTAAAAAATAAGTTT
TTGATTCCTTTGTACTAATAGTAAGATCAAAATTTCTGGGAAGACACTTT
TCATTGAAAATACAGTTTTTCATTCAATAGATTCAGATTACTGTCCCCCT
TTTTTTTTCCCCCCCCTCTCCACTTCTCGACCCACAAAAAAAAGAGGGGT
TCTTTCTCCCTTTATTANNATACCAACAGGCATCTAAATAATAATGATAC
TATTAATGATACTAATGACAATAATAATGAAGAATAAGATACAAAATAAA
CAAATGAACCAGAACAGAACAAAGCAAACATAATGAAAAAGAGGCAAAGA
AAAAGCACAAGAAATATACATGTAGACACAGAGACATATATGTTCACAAA
CACTCAGAAATCCCATAAAAACAAAAAAGACTGCAAACCATAATATATAA
ACAAAGGACCCTTAAGGTATTCTTTAAAGAACCCTGCCCATACCTTATTA
TATAAAGGACCTCCAAGATTATTATTCAGTTTGATTTTCATTTGCCAGGC
AATGCTGACCTAGAGACTTAAATTTAAGCATGGTTTGCATACCCAGTGAT
ACCCTAGTGAAAATTTGAATGTTTTCCTTTCCAAGCTACAAACTAAAAAT
AACTTCTGAAATAAGATAAGTGCATTGACGCCCTTCCCCTCCCTTGCTTG
GCTTCTTTTCTATTCAAACCTTGAAGCGCTGTGATTACAAAATACGTTAC
AAAAACTTTTATTCTATGGCATTGATAAAAAAAGCTTTGGGTGAAATTTT
TAACCCTTCTCCCCTTTGTCACGTAAATATTGAATAAAATCTCCTGGCTC
CCATTAAATATTCGGGTCCTCTTTTTATAAACTCGCTGACATAGCACTAT
CCCACCTCCTTCACCTTATGCCTCATCATCTTACATAACATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a19.g1 MSMg01no313_a19.g1 CHROMAT_FILE:
MSMg01no313_a19.g1 PHD_FILE: MSMg01no313_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:18 2005
         (379 letters)



>mm_chrX_53358124_53358899
          Length = 776

 Score =  244 bits (126), Expect = 8e-69
 Identities = 313/382 (81%), Gaps = 18/382 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactcaaagtcattggagacaacagcaaatctgttttgtccgaatggagaacggatgag 60
           |||| ||||||| |||||||||||||  | || | ||||| | ||||||||| ||  |||
Sbjct: 494 ctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatgggggag 436

                                                                       
Query: 61  gatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgtatattt 120
            ||| |||||||||||||||||||  || ||| |||| |||||| |||| |||| |||||
Sbjct: 435 tattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgtctattt 376

                                                                       
Query: 121 gtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattattacctc 180
           | ||||||| ||||||||| |||||| ||||||||| |||||||| |||  || || |||
Sbjct: 375 gagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctactaactc 316

                                                                       
Query: 181 tagggtccttaccatacttgcaaaatgaaacatttctcagttggaaaagctctcattttt 240
           || |||||||||||||||||||||||||||     ||||||| ||||| || |||| || 
Sbjct: 315 tacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttcatattc 261

                                                                       
Query: 241 ttcctctgtatacaatatgattcttt-aaaaaata--agtttttgattcctttgtactaa 297
            ||||||||||||||||||||||||| ||||||||  ||||| |||  |||||||||   
Sbjct: 260 gtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttgtac--- 204

                                                                       
Query: 298 tagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttcattcaa 356
              ||| ||| | |||| | |||||| |||||| |||||||||||| | |||||||||| 
Sbjct: 203 ---taacatctacattt-ttggaagatacttttaattgaaaataca-tcttttcattcag 149

                                 
Query: 357 tagattcagattactgtccccc 378
           || |||| |||||| |||||||
Sbjct: 148 tacattctgattacagtccccc 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 776
Length adjustment: 9
Effective length of query: 370
Effective length of database: 767
Effective search space:   283790
Effective search space used:   283790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)