BAC Information

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BAC

Clone NameMSMg01-313J05
ChromosomeX (Build37)
Map Location 31,704,863 - 31,705,248
singlet/doubletsinglet
Overlap genenone
Upstream gene1700017G21Rik, LOC665014, EG546205, LOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419
Downstream geneLOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743, LOC385298, LOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313J05.T7 (MSMg01no313_j05.b1)MSMg01-313J05.TJ (MSMg01no313_j05.g1)
ACCAG435463AG435464
length1,2711,281
length of high quality
(start - end)
703 (89 - 791)382 (85 - 466)
definitionCHROMAT_FILE: MSMg01no313_j05.b1 PHD_FILE: MSMg01no313_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:25 2005CHROMAT_FILE: MSMg01no313_j05.g1 PHD_FILE: MSMg01no313_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCCTTTTTNNNNNNNGGCACTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCTCTGCGTCTTGACCCTCTCTTGAAAAGGGCTTCTCC
ACCTGGATTTCCTCTGCATCTTCCTACTTTAAGGAGTGGGTGGGGGTAGG
CTTGTTTGCCGTGATCCTATGTGGTGGAACGTTGTTTTTGCTCTGGATGG
TCTGTAAACTTAAAGCCCAAACAAAAAGGGACAAGGTGGTGATAGCCGAA
GCACTTGCAGCATTAGAACATGGTGCCTCCCCTGATATATGGTTATTTAT
ACTTAAGCAATAGGTCACTGGCTGCTCAGCTCTTACACCCCATGAGGCTA
GTCTCATTGCACGGGATAGAGTGAGTGTGCTTCAGCAGCCAGAGAGAGTT
GCACGGCTAAGCACTGCAGTAGAAAGGCTCTGTGGCATAAAATGAGCCTG
TTCTAGGGAGACATGTCATCTTGTATGAAGGTTGAGTGTCCAAGTGTCCA
TGCCCCAGGAAAAACGACACGGGAGCGGACCAAGCCCCCTCCGGGTGACG
AGCCTGGGAGAAGGTTTTGTGTAATGCCCCTATTTTGCACACTGGGGATT
TGACCCCTATCTCCACTCTCAGTACTGGGTGGCCTGTTGCCTTTTAAATA
AAAGAAAAGTGGGAGATGTGAGGAGCCGCCCTTGCAATCGCCATTACAAG
ATGGCGCTTATATCCGGTGTTCTAACTGGTAAACAAATAGTCTGCGTATG
TGCTGGGGTATTTTTCCATTCCTTGTTCCCTGCCTGTCCCGTAGCATCAT
CTGGCCTGATAGCGAGCAGCCAGTCATGTTGATATATGTCTCCAACCCCT
CTTGTGGCCTATTTATAACCAAGTTCCTTGGGTCGGCCCTCCTCCCCCAT
AATCTGATGATCTTTTCTCCGAGATGCTTATATTTATTCTGTCAACATAT
TTAATGTTTCTTTGTTCTGTTTCTCCTCTCTCTTCTATTCTATATTCCCA
CTACAATTTTTTACTCTTTCGCACCTCTTTTTTTCATCTTTCTTCCTCAA
ATATCCTACTCTTTTTTTTCCTTCTCTTTCTTCCAATCTTTTTGTTCATC
TATATTTCCTCATTCTTATTCATCTTTCTCTTATTTTTCCTTCTTTACCC
ATTTCTTTCTCTTTTCTTCCTTTTCTTTCCTTTTATCTCTTTTCTTCACT
TTCTCACTTTTATCTTTCTCTTCTTCTACTCTTCTATCTTTTCATTTCTT
TTCTTTATCTCTTTCTCTTAC
NNAAAATANNNNNNNAATCACGGNATGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTACACAGAACAATT
TTATCAGTGTATTGGGGGCTAGGTGTGTTGTGTTTTTAAAACAAATTCCT
GAAAGATGAAAAGCAGATGAAAGGGTCACTGAAAGTGACCCGTCCAGCAG
GTCCAGTTATTTGAGGGTCTCGAGGGGACCTTCTCCTAAGAACCAAAAGG
GGGAGAGAGAGACGGAAACCAAGTACAAGAATGACATGGAAGCAGTCTGA
GTAGCATCAATGTCTCTCTGTATTCAGCAAGGCTTAAATGCACAAGCAAA
AGGGGAAGTACTTCTCAGTAGGAGGAATGGGGCAGCAGAAATGCACAAGC
AAAAGGAAGTACTTCTCAGCAGGAGGGGTGGGGCAGTGGAAATTTTTCTT
TTGGCAGCTACAAGGTTAATCAGGAACTTGGTGGTATCAGGTTACATCTT
GTGAACAGGACATCTGACGCTGATTTAGGGCTGGAACATTCTGTGGTTGT
TCTCAGAATGGTGCATCGGTGGCCCGCTTTGACCCCCTTTTCTTCTTGGG
GGGAGAGGCCCAATTCAGAGATCAAGACAATAGAGTTGTCTTAATAACTC
CCAACATGAAAGGATTTAAACTAAAGAAATTAACCAAAGGATATAATTAT
CGCAGAAAAAAATTAAGGATTCATGGCCAGGTTAAAAAAGATTTTGCAAA
GACCATGAAGCCAGAACGAATTGATCACCCTGAGTTCTGTTCTAGTGGAA
CAGAACTCTAAAACAGTGGAAGGGGATAGGTAGTAGGGAGGGGATTCTTT
GCAGGGAGGAAGCTGGTCTCTGGGAAAGGCGAGGGAACTATTATTGCTGA
AGCCTTTGGCTGAATCCCAAGGGGGCAAAGGATCTTGTCCTCCCCAAAGC
TAATATGAACGTACCCGGTAGCATCCCAGTACCCCCTGACCCCCGCAACA
TTCCCTTCCCTGGCCAGTCCAATGTTTCCACAATTCCTGCCTCTGGAAAT
GAAAGATTTTTCCTTTCCCCCCTGCAAAGCTCTCTCTCGGCGGACTCCTT
CCTCCTTTCTTCTATTTTACCAATAACCGCCCCCGCGGTCCCTACCCCCT
TCGCACCCATCTCCTTGTTCATCACCTCCACATCCTTCCCTTACCTGCTT
TCTCTTCCTCTTCCCCTTCCATGACTCCTCTCCCTCCTTTCCCCCTTTTC
CCCCTCATTTCTCTCCCTTTTATCTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_j05.g1 MSMg01no313_j05.g1 CHROMAT_FILE:
MSMg01no313_j05.g1 PHD_FILE: MSMg01no313_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:25 2005
         (382 letters)



>mm_chrX_31704663_31705444
          Length = 782

 Score =  669 bits (346), Expect = 0.0
 Identities = 375/386 (97%), Gaps = 5/386 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtacacagaacaattttatcagtgtattgggggctaggtgtgttgtgtttttaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtacacagaacaattttatcagtgtattgggggctaggtgtgttgtgtttttaaaacaa 260

                                                                       
Query: 61  attcctgaaagatgaaaagcagatgaaagggtcactgaaagtgacccgtccagcaggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcctgaaagatgaaaagcagatgaaagggtcactgaaagtgacccgtccagcaggtcc 320

                                                                       
Query: 121 agttatttgagggtctcgaggggaccttctcctaagaaccaaa-agggggagagagaga- 178
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 321 agttattcgagggtctcgaggggaccttctcctaagaaccaaatagggggagagagagag 380

                                                                       
Query: 179 -cggaaaccaagtacaagaatgacatggaagcagtctgagtagcatcaatgtctctctgt 237
            ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acggaaaccaagtacaagaacgacatggaagcagtctgagtagcatcaaggtctctctgt 440

                                                                       
Query: 238 attcagcaaggcttaaatgcacaagcaaaaggggaagtacttctcagtaggaggaatggg 297
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 attcagcaaggcttaaatgcacaagcaaaaggggaagtacttctcagcaggaggaatggg 500

                                                                       
Query: 298 gcagcagaaatgcacaagcaaaag--gaagtacttctcagcaggaggggtggggcagtgg 355
           ||||  ||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagtggaaatgcacaagcaaaagaggaagtacttctcagcaggaggggtggggcagtgg 560

                                     
Query: 356 aaatttttcttttggcagctacaagg 381
           ||||||||||||||||||||||||||
Sbjct: 561 aaatttttcttttggcagctacaagg 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)