BAC Information

Click to search

BAC

Clone NameMSMg01-315I08
ChromosomeX (Build37)
Map Location 8,494,379 - 8,495,048
singlet/doubletsinglet
Overlap genenone
Upstream genePcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik
Downstream geneLOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3, 1700054O13Rik, 4930557A04Rik, Sytl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315I08.T7 (MSMg01no315_i08.b1)MSMg01-315I08.TJ (MSMg01no315_i08.g1)
ACCAG436141AG436142
length729731
length of high quality
(start - end)
669 (50 - 718)345 (74 - 418)
definitionCHROMAT_FILE: MSMg01no315_i08.b1 PHD_FILE: MSMg01no315_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:00 2005CHROMAT_FILE: MSMg01no315_i08.g1 PHD_FILE: MSMg01no315_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGATTTATCCACTATTGGGGGCTCACTCCTATTACTCAAA
AGTCATGGTGTATGTAATCCTGGCCTGCTCATGGTTATAAACTAGCACTC
ACAGTGTATGTATTGTGAGAGGCTCATGACTATAACCCAGCACTCATTGT
GAATGTACTATACAAGACTCAAAACAATAATCCAGCACTCATGGTGTGTG
TACTGTCATGGGATCATGCCTATGACTCAGGAATTATGGTGCATGTACTG
TTGGAGACTCATGCCTATAACCCAGGAATCATTGTGAATGTACTATGTGA
AACTCAAGCCTGTAACCCAGCACTCATGGTGCATGTACTGTGATGGGTAC
GGGGTTAGATACCACAGCACCCCCCCTGCATTCAGGGCATGAGGCCGACA
CTTTCTTTTCATTTTTTTATTAGATATTTTCTTCATTTACATTTTGAATG
CTATCCCGAAAGTAACCTACACACTCCCCCCGCCTTGCTCCCCTACCCAC
CGACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAG
TTTGCAAGACCAAGGGGTCTCTCTTCCCAATGATGGCCAACCAGGCACTG
TGGGAAGCTGATGGCTCTAACCCAGCACGTGTTCCATGCACTGTTGAAGA
CACAGGCCTGTAACTCAGAAACCATGGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGACAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTCCAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGCACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGCCCACAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAATT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTCA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTA
AACACATGAAACTCAAGAAGAATGAAGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_i08.b1 MSMg01no315_i08.b1 CHROMAT_FILE:
MSMg01no315_i08.b1 PHD_FILE: MSMg01no315_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:00 2005
         (669 letters)



>mm_chrX_8494175_8495243
          Length = 1069

 Score = 1164 bits (602), Expect = 0.0
 Identities = 651/670 (97%), Gaps = 5/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgatttatccactattgggggctcactcctattactcaaaagtcatggtgtat 64
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgatacatgtactattgggggctcactcctattactcaaaagtcatggtgtat 264

                                                                       
Query: 65  gtaatcctggcctgctcatggttataaactagcactcacagtgtatgtattgtgagaggc 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaatcctggggtgctcatggttataaactagcactcacagtgtatgtattgtgagaggc 324

                                                                       
Query: 125 tcatgactataacccagcactcattgtgaatgtactatacaagactcaaaacaataatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatgactataacccagcactcattgtgaatgtactatacaagactcaaaacaataatcc 384

                                                                       
Query: 185 agcactcatggtgtgtgtactgtcatgggatcatgcctatgactcaggaattatggtgca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 agcactcatggtgtgtgtactgtcatgggatcatgcctatgactcaggaattatggcgca 444

                                                                       
Query: 245 tgtactgttggagactcatgcctataacccaggaatcattgtgaatgtactatgtgaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtactgttggagactcatgcctataacccaggaatcattgtgaatgtactatgtgaaac 504

                                                                       
Query: 305 tcaagcctgtaacccagcactcatggtgcatgtactgtgatgggtacggggttagatacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaagcctgtaacccagcactcatggtgcatgtactgtgatgggtacggggttagatacc 564

                                                                       
Query: 365 acagcaccccccctgcattcagggcatgaggccgacactttcttttcatttttttattag 424
           ||||||  |   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagcagtcatgctgcattcagggcatgaggccgacactttcttttcatttttttattag 624

                                                                       
Query: 425 atattttcttcatttacattttgaatgctatcccgaaagtaacctacacactccccccgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atattttcttcatttacattttgaatgctatcccgaaagtaacctacacactccccccgc 684

                                                                       
Query: 485 cttgctcccctacccaccgactcccacttcttggccctggtgttcccctgtactggggca 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 cttgctcccctacccaccgactcccacttcttgaccctggtgttcccctgtactggggca 744

                                                                       
Query: 545 tataaagtttgcaagaccaaggggtctctcttcccaatgatggccaaccaggcactgtgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tataaagtttgcaagaccaaggggtctctcttcccaatgatggccaaccaggcactgtgg 804

                                                                       
Query: 605 gaagctgatgg-----ctctaacccagcacgtgttccatgcactgttgaagacacaggcc 659
           |||||||||||     ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 805 gaagctgatgggatggctctaacccagcatgtgttccatgcactgttgaagacacaggcc 864

                     
Query: 660 tgtaactcag 669
           ||||||||||
Sbjct: 865 tgtaactcag 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)