BAC Information

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BAC

Clone NameMSMg01-315L16
ChromosomeX (Build37)
Map Location 101,006,621 - 101,006,939
singlet/doubletsinglet
Overlap geneSlc16a2
Upstream geneEG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, EG621381
Downstream geneEG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542, Uprt, Zdhhc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315L16.T7 (MSMg01no315_l16.b1)MSMg01-315L16.TJ (MSMg01no315_l16.g1)
ACCAG436288AG436289
length725739
length of high quality
(start - end)
320 (324 - 643)583 (76 - 658)
definitionCHROMAT_FILE: MSMg01no315_l16.b1 PHD_FILE: MSMg01no315_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:18 2005CHROMAT_FILE: MSMg01no315_l16.g1 PHD_FILE: MSMg01no315_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGAGCTGCGCGGAATTCCTG
ATCCTCCCGAAAAAGTTTTCAAGTGCTAGGATTATAGGCCTGCACCACAA
GACCTGGTTACAAATTCCTTAATTCTCAACTTCTGTACTGTTACTTTTGC
CGAGTTTCCATGTAGCTAAACCCTATGTCAAGTTCTAGGCCTACCAGCAA
GCTTCCCCTGATTCTACATTCTTCTCTGTTTGCCCACATCACCACTATAA
AGTGATAACAATATTCAACTCAATACAACACACATTTTTTTTCCTACTTA
GCAATAACCATATNAATTTTTAATGTTGTATTTTTTTTTCAAAGAAATTG
TAAACTTAAGGGACACTACTCTGGCTCATCTGGAGATCATTCCAGCACAC
AGGAAAGACCTACTTTCTTGAATTAAACCCACATTCATGCAATTGGAGGA
TAATGGATGGGGAAGGCTCGTGAGCCAGGAAAAGAACTCACACTTAATCA
AATGCTTAGTAGGTGCCAAGTTCTATGTCAGATGCTGAACGTATGTTGTC
TCATTTAACCTCCATCTCAGCGATGAAATTTTTTGTATTAGAAAACTAAT
AAAATTTCCAAGAAACTGAAACTTTGTCCAGGAACCATATGTTAAGGCAT
CTCCATCTAGNGCTGCTTCATCCTAAAGCCTATTAGAAAATATTGGAGAC
AACTGAATGTCTGTCAGTAAGACAC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGTTCCCCATTTT
TAGAATAAGGTTATTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCT
TTGTATATATTGGATAATAGCCCTCAATTAGGTGTAGGATCGGTAAAGAT
CTTTCTCCAATCTTTTGGTTGGTGTTTTGTCATATTGACAGTGTCCTTGG
CCTTACAAAAACTTTGCAGTTTTATGAGGTCTCATTTGTCAATTCTTGAT
CTTAAAGCATGAACCATTGGTGTTCTGTTCAGGGACTTTTCCCCTGCACC
CATGTGTGCAAGGCTCTTCCCCAGTTTTTCTTCTGTTAGTTTCAGTGTAT
ATGGTTTTATGTGGAGGCCCCTGATCTGCTTAGAACTGAGCTTAGTACAG
GGAGATAAGAATGGATCTTTGCATACTTCTATATGTTGACCGCCAGTTGA
ACCAGCACCATTTGTTGAAAATGCAGTCTTTTTTCCACTGGATGGTTTTA
GATTCTTTGTCAAAGATCAAGTGAACATAGGTGTGTGGGTCCAATTCTTG
GCCTTCAATTCTATTCTGTTGATCTACCTGCAAGTCACTGTACCAGGTAC
CATGCAGTTTTTATCACAATTGCTCTGTATTACAGCTTAATGTCAGGTAT
AGTGATTCCCCCAGAAGTTCTTTAATTGTTGAGAATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_l16.b1 MSMg01no315_l16.b1 CHROMAT_FILE:
MSMg01no315_l16.b1 PHD_FILE: MSMg01no315_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:18 2005
         (320 letters)



>mm_chrX_101006421_101007139
          Length = 719

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%), Gaps = 1/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgtatttttttttcaaagaaattgtaaacttaagggacactactctggctcatctgg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgtatttttttt-caaagaaattgtaaacttaagggacactactctggctcatctgg 259

                                                                       
Query: 61  agatcattccagcacacaggaaagacctactttcttgaattaaacccacattcatgcaat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 260 agatcattccagcacacaggaaagacctattttcttgaattaaacccacattcatgcaat 319

                                                                       
Query: 121 tggaggataatggatggggaaggctcgtgagccaggaaaagaactcacacttaatcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggaggataatggatggggaaggctcgtgagccaggaaaagaactcacacttaatcaaat 379

                                                                       
Query: 181 gcttagtaggtgccaagttctatgtcagatgctgaacgtatgttgtctcatttaacctcc 240
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcttagtaggtgccaaggtgtatgtcagatgctgaacgtatgttgtctcatttaacctcc 439

                                                                       
Query: 241 atctcagcgatgaaattttttgtattagaaaactaataaaatttccaagaaactgaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atctcagcgatgaaattttttgtattagaaaactaataaaatttccaagaaactgaaact 499

                               
Query: 301 ttgtccaggaaccatatgtt 320
           ||||||||||||||||||||
Sbjct: 500 ttgtccaggaaccatatgtt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)