BAC Information

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BAC

Clone NameMSMg01-315N06
ChromosomeX (Build37)
Map Location 110,426,257 - 110,426,446
singlet/doubletsinglet
Overlap geneDach2
Upstream geneApool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315N06.T7 (MSMg01no315_n06.b1)MSMg01-315N06.TJ (MSMg01no315_n06.g1)
ACCAG436356AG436357
length725738
length of high quality
(start - end)
244 (69 - 312)194 (129 - 322)
definitionCHROMAT_FILE: MSMg01no315_n06.b1 PHD_FILE: MSMg01no315_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:25 2005CHROMAT_FILE: MSMg01no315_n06.g1 PHD_FILE: MSMg01no315_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTATTCGNGACGGGGGGCGGAATTCT
TTGTTTTTCTNTGAGCCCCATTTTTTAATGGGATTATTTGATTTTCTGAA
GTCCACCTTCTTGAGCCCTTTATATATGTTGGATATTAGTTCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTATGGAGTTTCATTATTTC
CCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTACCCAGTGCCTATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCACCGCCTCTGGTTTTATGTGAAGTTCCTTAATCCACTA
AGATTTGACCTCCCCCCCAGGAGAAAAGTATGGATCGATTCGCATTCTTC
TACATGATAACAACCAGTTGTGTCAGCACCAATTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCACAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTTAATTCTATTCCATTGGACTACTT
GTCTGTCTCTATACCGTACCATCGCGTTTTTTATCACAACTGTTTTTGTT
TTTTTTTTTCGCGTCCGGCACGGCGATCCCCCTTCAGGGCTTTTTTTCCT
TCGCGAAAGTTTTTGCTTTCCTAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAAAGAATGCCAAAGGTTGA
GGAGATATTCTTGACCCAAAGTCTCCCCACAGCAGCATTTCCAGCACATT
TGAAGAACATTAAAAATACTAGTATGGCTATAGTGGAGTAAGGGAAGAGA
ACTGGAAAGAGAACATACTGGTAATGAAGAAGTTTGTTTATACATATCGT
TAGAGTCATCTTTAAGATTTTGCCATGAACTTATATAATGGAGAGAGATT
CACATGTAGGGTTTTAAGTAGGGGTATAAAATGAGATAGATCATCACTTG
GAAGTAAGGGTTAGAAAAGAGGTCTGGAACGGTGGCAACAGGAGGAAGGA
TTTATCGGGAAAATTTGAGATCCCCCCCCCAGCAACTAGGAGAATCTACT
ACTGAAAGAAGGCAGTTGTCATTACACGCCCATTGATACTTATGCCGCAT
AAATTTAAAAAGATCAATGAGACTTTGTGTTTCTATTTTACCAGGTACAA
CCGCCCGAATACTGATGCAAAGTCGTTAGACAATCCGATTTTACAAGAGC
TGTGGTTTTGTCATCGAGGTGCTTTCTTAACAAGTAAAAGGCAAGACAGT
TGAGCACAATTATCCTTTGTATTAGATAATTATAACACAGGAAAATGTAC
TGAACGTTGTTGGACAGCATCGTGAGAGTACGTGTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_n06.g1 MSMg01no315_n06.g1 CHROMAT_FILE:
MSMg01no315_n06.g1 PHD_FILE: MSMg01no315_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:25 2005
         (194 letters)



>mm_chrX_110426057_110426650
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 189/190 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcagcatttccagcacatttgaagaacattaaaaatactagtatggctatagtggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagcagcatttccagcacatttgaagaacattaaaaatactagtatggctatagtggag 260

                                                                       
Query: 61  taagggaagagaactggaaagagaacatactggtaatgaagaagtttgtttatacatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagggaagagaactggaaagagaacatactggtaatgaagaagtttgtttatacatatc 320

                                                                       
Query: 121 gttagagtcatctttaagattttgccatgaacttatataatggagagagattcacatgta 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagagtcatctttaagattttgccatgaacttatataatggagagagattcacatgta 380

                     
Query: 181 gggttttaag 190
           ||||||||||
Sbjct: 381 gggttttaag 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)