Query= MSMg01no315_o24.b1 MSMg01no315_o24.b1 CHROMAT_FILE:
MSMg01no315_o24.b1 PHD_FILE: MSMg01no315_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:33 2005
(697 letters)
>mm_chrX_59371909_59373004
Length = 1096
Score = 1247 bits (645), Expect = 0.0
Identities = 681/693 (98%), Gaps = 1/693 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttattattcctactattgtattatttgtgatggcattgtaacttaatagttc 64
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcttttattatttctactattgtattatttgttatggcattgtaacttaatagttc 264
Query: 65 ccaatgatttacacaacattagctataaacttcccaatgttgacatttcacaaagaatta 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaatgatttacaaaacattagctataaacttcccaatgttgacatttcacaaagaatta 324
Query: 125 gttttgatgtgagaaactatttacaaaaggcatttccacaggttgggtgtgtagaagggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttttgatgtgagaaactatttacaaaaggcatttccacaggttgggtgtgtagaagggg 384
Query: 185 caaagtgcttttattccctgtagagccttaccttagttggagttgtagtgttataacaga 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 caaagtgcttttattccctgtagagccttatcttagttggagttgtagtgttataacaga 444
Query: 245 ttatgtaagaccttgttgctcagcaagtcaaaatgaagtaaactatttttgtctttgttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatgtaagaccttgttgctcagcaagtcaaaatgaagtaaactatttttgtctttgttg 504
Query: 305 ttgttgttatcccatggtatcttatatgagtgttgttatcctcatatacggcagttccat 364
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 505 ttgttgttatcccatggtatcttatataagtgttgtaatcctcatatagggcagttccat 564
Query: 365 tttaattcctcccccactacactccatcccccaatgcctagagttctctatgaagaccag 424
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttaattcctctctcactacactccatcccccaatgcctagagttctctatgaagaccag 624
Query: 425 aatggtctcaaagacatagagaaatgcccacctttgtattctaaatgctggaatttataa 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 aatggtctcaaagacatagagaaatgcccacctt-gtattctaaatgctggaatttataa 683
Query: 485 aatgccagcatagaacctattgaaaaacattaaattttatattgtttaaatgcatttcaa 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 684 aatgccagcatagaacctattgaaaaacactaaattttatattgtttaaatgcatttcaa 743
Query: 545 tgttacctatgtattcatgtaagtgtcaccccacgcacacacatacatacttttatactt 604
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 744 tgttacctatgtattcatgtaagtgtcaccccacccacacacatacatacttttatactt 803
Query: 605 ttaaaaatagaactgggcttaagtatttgcttaaacaccacttacatagaatcctggtac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttaaaaatagaactgggcttaagtatttgcttaaacaccacttacatagaatcctggtac 863
Query: 665 tttgcattctgagttctgtcaataatgacttta 697
|||||||||||||||||||||||||||||||||
Sbjct: 864 tttgcattctgagttctgtcaataatgacttta 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1096
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1086
Effective search space: 746082
Effective search space used: 746082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_o24.g1 MSMg01no315_o24.g1 CHROMAT_FILE:
MSMg01no315_o24.g1 PHD_FILE: MSMg01no315_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:33 2005
(640 letters)
>mm_chrX_59567071_59568110
Length = 1040
Score = 1149 bits (594), Expect = 0.0
Identities = 630/642 (98%), Gaps = 3/642 (0%)
Strand = Plus / Minus
Query: 1 cataagcatttccaatggattaggatcatatccaactttctattgcactcattcatcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cataagcatttccaatggattaggatcatatccaactttctattgcactcattcatcctt 689
Query: 61 gaaataatgtttcctgccttccgttattcagtcaaggtaatggattaagtggattgatca 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaaataatgtttcctgccttcctttattcagtcaaggtaatggattaagtggattgatca 629
Query: 121 tttttctttccctttgtattttccttagcatcagctaggagtagaggtgaagactagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttttctttccctttgtattttccttagcatcagctaggagtagaggtgaagactagtca 569
Query: 181 atatccatttcatttctgtcaacaaccagcagcaagcacattaaggtatgaaagtaatag 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 568 atatccatttcatttctgtcaacaaccagtagcaagcacattaaggtatgaaagtaatag 509
Query: 241 ttggttttccatgaacacatgataaattaaaaggtaactttcatatcataatgaattcat 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 508 ttggttttccatgaacacatgataatttaaaaggtaactttcatatcataatgaattca- 450
Query: 301 tg-agtgtgagtgttttgtatgtaagtatgagtttactattcactcacccgcaatttacc 359
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 tgaagtgtgagtgttttgtatgtaagtatgagtttactattcactcatttgcaatttacc 390
Query: 360 aaattgacttatttatgaattcaaatataaaaaagtatagctagtatagctagtactcta 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaatttacttatttatgaattcaaatataaaaaagtatagctagtatagctagtactcta 330
Query: 420 ctaaataaactttgactttgacaaatgttgatttactttttaaattgcctttaataagac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctaaataaactttgactttgacaaatgttgatttactttttaaattgcctttaataagac 270
Query: 480 taaaatttgttctttgaaattataataattttattgcagtcacaggatagtagaacatca 539
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taaagtttgttctttgaatttataataattttattgcagtcacaggatagtagaacatca 210
Query: 540 tcactactctatgagttattttctgttgctgt-aaaaaacaccatgaccaaggcaaaatt 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 209 tcactactctatgagttattttctgttgctgtaaaaaaacaccatgaccaaggcaaaatt 150
Query: 599 ggattttcttatgcttccacaactttagagtctatgatgtaa 640
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ggattttcttatgcttccacaactttagagtctatgatgtaa 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
