Query= MSMg01no316_g16.b1 MSMg01no316_g16.b1 CHROMAT_FILE:
MSMg01no316_g16.b1 PHD_FILE: MSMg01no316_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:09 2005
(369 letters)
>mm_chrX_21204223_21204991
Length = 769
Score = 700 bits (362), Expect = 0.0
Identities = 365/366 (99%)
Strand = Plus / Minus
Query: 4 ggaattcagggcaatctccctttctcagcttctccagaggctagtgttatggacatcaac 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggaattcagggcaatcttcctttctcagcttctccagaggctagtgttatggacatcaac 510
Query: 64 tgcatctcacagcctatatagaatttaaggaacctgcttcaatgtgctcattgcctgtgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgcatctcacagcctatatagaatttaaggaacctgcttcaatgtgctcattgcctgtgt 450
Query: 124 ttataaaatgttaatggcacaaaaactccaaccttctcatctccactattgtgttgcagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttataaaatgttaatggcacaaaaactccaaccttctcatctccactattgtgttgcagg 390
Query: 184 taacaaatgtctacataaacataaagtttgctggctcaattcattcttggttcatttttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taacaaatgtctacataaacataaagtttgctggctcaattcattcttggttcatttttc 330
Query: 244 tattctccaataagacagtacctacaaagccaggcatattttttaaggatgtcatggcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tattctccaataagacagtacctacaaagccaggcatattttttaaggatgtcatggcct 270
Query: 304 agatgtgttagcctaaatcctggattcaagaaatgaagttttggctttctgatcactgac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agatgtgttagcctaaatcctggattcaagaaatgaagttttggctttctgatcactgac 210
Query: 364 tacgta 369
||||||
Sbjct: 209 tacgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_g16.g1 MSMg01no316_g16.g1 CHROMAT_FILE:
MSMg01no316_g16.g1 PHD_FILE: MSMg01no316_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:09 2005
(671 letters)
>mm_chrX_21031122_21032186
Length = 1065
Score = 1154 bits (597), Expect = 0.0
Identities = 650/671 (96%), Gaps = 6/671 (0%)
Strand = Plus / Plus
Query: 1 atgacccgcctgcctcagctgcccttaagctagcattacaagcattgctgtccaggtcca 60
||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||
Sbjct: 201 atgacccgcctgcctcagccgccctaaagctagaattacaagcatggctgtccaggtcca 260
Query: 61 gttatacagaatactgtactgcttttgagtaatggaggtttcctgtagtaacaaaacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatacagaatactgtactgcttttgagtaatggaggtttcctgtagtaacaaaacatt 320
Query: 121 cagaattcctctcccatcactgttgttactcatttcacattcatgcaagtagacatagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaattcctctcccatcactgttgttactcatttcacattcatgcaagtagacatagac 380
Query: 181 aatcaaatcgattttattattttacaaagctttgaagatgttaataataataataataac 240
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aatcaaatagattttattattttacaaagctttgaagatgt------taataataataac 434
Query: 241 cacttttcctttcatttagtcctgtcccatatctcttactttctttccgtagatcaccat 300
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 cactcttcctttcatttagtcctgtcccatatctcttactttctttctgtagatcaccat 494
Query: 301 tttctttttattcaaaatactactttcacggcaaaccttccccccccaaatttccttcca 360
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 495 tttctttttattcaaaatactactttcacggcaaaccttctgcccaaaaatttccttcca 554
Query: 361 cctttgcatgtttaaagtctttatattgtcgttgcttttgagagtgcgtggaggtatgca 420
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 555 cctttgcatggttaaagtctttatattgtcgttgcttttgagagtgtgtggaggtatgca 614
Query: 421 tgtgcatgtggtgggcagaaactgatgttgggtatctcccttcattgttttccactttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgtgcatgtggtgggcagaaactgatgttgggtatctcccttcattgttttccactttat 674
Query: 481 tagttgagagagcatatctcactgaaccccgggcttgctgattggctagataatgttgat 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 675 tagttgagagagcatatctcactgaaccctgggcttgctgattggctagataatgttgat 734
Query: 541 agcaaaccttaggaatactcctgcttctgcatccccaggactgggattatatgaaagtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 735 agcaaaccttaggaatactcctgcttctgcatccccaggactgggattataagaaagtgt 794
Query: 601 ggttatttctaacttttacatagactctcgggagtcacactcatttttcttatgtgacaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggttatttctaacttttacatagactctcgggagtcacactcatttttcttatgtgacaa 854
Query: 661 gcactttacta 671
|||||||||||
Sbjct: 855 gcactttacta 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1065
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1055
Effective search space: 697355
Effective search space used: 697355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
