TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGCCCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCCCACTACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
AGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTATCC
TTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCATAACAATAAGAAAAACAAA
TACTATACAGAGTCACTTCCTGACCATGAGCCATATCCATTAGTTATACT
CAGTGAGTAAGTGCTCAGTCCCCTTTCACCTCTGCTTGGCTTATTTCTGC
CAGTCATGCCACCACTCAAGTTCCATCATTGGAGGAGTGCAAGTATCATG
TTAGAACCAAAGGTAAACCTCCAACAACCAAGGCATGAGTAAGTAGACCA
TTCTCTCTTGGGCTAGGCAGTTCCAAGACTGAACTGAACTGTGATTAAAC
ACCAGTAGTTTGATAAACTGTAAGCTTAGAAAGTGAAGCAGAGGAACAAA
AATCTCTATGGCTGGAAAACCTTCCAAATGCCAGAAAGATCACATTCTGA
CGATACAGCTATGACAGAAAGAGTTTGCAGAGTCCGGGAATACAGACAGG
CATAGGGCACTTGTTATAACAGAAGTTTATTTGCAATAGTTTTTTTTCCT
CCATCTGTTTGGTTTCTTTCCTTTTTTTATTAGATATTTTCTATATATAC
ATTTCAAATGCTATCCTGAAAGTTCCCTATACCCTGCCCCTGCCCTGCTC
CCACTCCTGCTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCAAATAAAG
TTTGCAAACCAATGGGCCTCTCTTCCCAATGATGGCCTACT

Query= MSMg01no316_j15.g1 MSMg01no316_j15.g1 CHROMAT_FILE:
MSMg01no316_j15.g1 PHD_FILE: MSMg01no316_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:23 2005
         (665 letters)



>mm_chrX_67981580_67982645
          Length = 1066

 Score = 1234 bits (638), Expect = 0.0
 Identities = 659/666 (98%), Gaps = 1/666 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcataacaataagaaaaacaaatactatacagagtcacttcctgaccatgagccatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtcataacaataagaaaaacaaatactatacagagtcacttcctgaccatgagccatat 632

                                                                       
Query: 61  ccattagttatactcagtgagtaagtgctcagtcccctttcacctctgcttggcttattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 631 ccattagttatactcagtgagtaagtgctcagtcccctttcacctctgcttagcttattt 572

                                                                       
Query: 121 ctgccagtcatgccaccactcaagttccatcattggaggagtgcaagtatcatgttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctgccagtcatgccaccactcaagttccatcattggaggagtgcaagtatcatgttagaa 512

                                                                       
Query: 181 ccaaaggtaaacctccaacaaccaaggcatgagtaagtagaccattctctcttgggctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccaaaggtaaacctccaacaaccaaggcatgagtaagtagaccattctctcttgggctag 452

                                                                       
Query: 241 gcagttccaagactgaactgaactgtgattaaacaccagtagtttgataaactgtaagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcagttccaagactgaactgaactgtgattaaacaccagtagtttgataaactgtaagct 392

                                                                       
Query: 301 tagaaagtgaagcagaggaacaaaaatctctatggctggaaaaccttccaaatgccagaa 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 391 tagaaagtgaagcagaggaacaaaaatctctatggctggaaaatcttccaaatgccagaa 332

                                                                       
Query: 361 agatcacattctgacgatacagctatgacagaaagagtttgcagagtccgggaatacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agatcacattctgacgatacagctatgacagaaagagtttgcagagtccgggaatacaga 272

                                                                       
Query: 421 caggcatagggcacttgttataacagaagtttatttgcaatag-ttttttttcctccatc 479
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 271 caggcatagggtacttgttataacagaagtttatttgcaatagtttttttttcctccatc 212

                                                                       
Query: 480 tgtttggtttctttcctttttttattagatattttctatatatacatttcaaatgctatc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgtttggtttctttcctttttttattagatattttctatatatacatttcaaatgctatc 152

                                                                       
Query: 540 ctgaaagttccctataccctgcccctgccctgctcccactcctgcttcttggccctggca 599
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  
Sbjct: 151 ctgaaagttccctataccctgtccctgccctgctcccactcctgcttcttggccctggtg 92

                                                                       
Query: 600 ttcccctgtactggggcaaataaagtttgcaaaccaatgggcctctcttcccaatgatgg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ttcccctgtactggggcaaataaagtttgcaaaccaatgggcctctcttcccaatgatgg 32

                 
Query: 660 cctact 665
           ||||||
Sbjct: 31  cctact 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space:   691680
Effective search space used:   691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)