BAC Information

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BAC

Clone NameMSMg01-316J16
ChromosomeX (Build37)
Map Location 68,035,036 - 68,202,621
singlet/doubletdoublet
Overlap genenone
Upstream geneAff2, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993
Downstream genePpia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316J16.T7 (MSMg01no316_j16.b1)MSMg01-316J16.TJ (MSMg01no316_j16.g1)
ACCAG436906AG436907
length731731
length of high quality
(start - end)		604 (128 - 731)572 (76 - 647)
definitionCHROMAT_FILE: MSMg01no316_j16.b1 PHD_FILE: MSMg01no316_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:23 2005CHROMAT_FILE: MSMg01no316_j16.g1 PHD_FILE: MSMg01no316_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,035,036 - 68,035,639)(68,202,152 - 68,202,621)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCCCTATGTTATCGGCTGGAACCAGCAAGCTGAAATAAATCCTTC
CCTATCCAAGTTGCTTTTGTTCATGCTGTTTATCTCATCCAAAGAAAGTA
GATTAGAACAACCTTTAAAGGCTTCTCTGTCTCCAGTGTTTCATGATTGT
ATACTAGATGTATGATTTGTTTTGGTGTGTTGTATAGTACATATGTGCTA
GCATGTGCTGTGTCACCTTCTGTGAACTTCCAGACCAGGAGTGTTAACTC
TGTTCCCATAGTTTCTATCTTGAATTTTGTCCTTATATATAATATTTGTT
GTAGTATTATTTATAATGTTTAATATAATATTTTTTTACAAAGTCACTGT
GTACTTGGCTATTTTGTCCTCACCTTGAATTCCCAGAGCGCAGGGATTCT
GTTGATCTTACCCATCAACTTGTCCCTAGTACCCAGCACAGTGGTTGGTT
CACAGTAGAAATAGATTGTTGATTCAATGGCTGCATGGGTCGTATTTGCC
TCTGTGTTCGAGGAGTGTGGGCGTTCTGTGTGAATGATGATCTGGAAAGT
ACTCTGAACCAGACAAACATAGATTTGGCTTCTGTCTGAATCTTGGGCTA
ACCCCTAGTCATGATTGTTGCCTAGACCTTCAGTAAATGATTCTACTAGC
TGTCAAGAGCATTAGGCACTGGCAGCAATAA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTATTTATTGATCTTAGTAGTAA
ATCAGCACAGTCAGTTGGGTGCGCCTGGGGCAGGTGCTGGAAACATTTTG
AAGACAGAGTGCTGACCCTCGGACCCCTTTATCATCTGATTCCAAGGTGG
CTGGTTTTTACACACATTACTGAACCATACCTCATAGGCGCCTAGATTAT
GAATATAGCCTGTGGTTCTACAAGGTTGGTCTCCAGTGTCCTGGGGCTAA
CAGTGTTCTGGTAGCATTTCCTAATTACCCTAGTGTAAATACTCGCATCA
CAAAGCATGATTTTAAACAGCAACATGCTGACAACTGTTCATTTTCATTA
ACCTGTCTGAAATGACACACTCATCTTTGAGAAGTAGGGGAGACTAGCCT
AAACACATAGCTGCCTAAGCCAAAAATGAAGCAGTCTACTGTGAGCTAAG
AGGCAGAAGTTCTTGTCCAATAACAGTTCTATTGAAGCACACTTCTTATT
ACCTCTTCTGAGCCTCTATTTCCCCAAGTGTCAAATCACCAAGATTTCTG
TTCTATTTCTTCAAAGGCCATGGAGTATCATGAGCCAATGGACAGGGAAT
GTGCTTTGAAAACAAACAGCAGTTCCTTCTTTTCTTCTTGACAACTTGCT
GGACATACCTAGCATCTCCTTCTGTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_j16.b1 MSMg01no316_j16.b1 CHROMAT_FILE:
MSMg01no316_j16.b1 PHD_FILE: MSMg01no316_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:23 2005
         (604 letters)



>mm_chrX_68034836_68035839
          Length = 1004

 Score = 1145 bits (592), Expect = 0.0
 Identities = 601/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttatctcatccaaagaaagtagattagaacaacctttaaaggcttctctgtctccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttatctcatccaaagaaagtagattagaacaacctttaaaggcttctctgtctccagt 260

                                                                       
Query: 61  gtttcatgattgtatactagatgtatgatttgttttggtgtgttgtatagtacatatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcatgattgtatactagatgtatgatttgttttggtgtgttgtatagtacatatgtg 320

                                                                       
Query: 121 ctagcatgtgctgtgtcaccttctgtgaacttccagaccaggagtgttaactctgttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagcatgtgctgtgtcaccttctgtgaacttccagaccaggagtgttaactctgttccc 380

                                                                       
Query: 181 atagtttctatcttgaattttgtccttatatataatatttgttgtagtattatttataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtttctatcttgaattttgtccttatatataatatttgttgtagtattatttataat 440

                                                                       
Query: 241 gtttaatataatatttttttacaaagtcactgtgtacttggctattttgtcctcaccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gtttaatataatatttttttacaaagtcactgtgtacttggctattttgtcttcaccttg 500

                                                                       
Query: 301 aattcccagagcgcagggattctgttgatcttacccatcaacttgtccctagtacccagc 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattcccagagcacagggattctgttgatcttacccatcaacttgtccctagtacccagc 560

                                                                       
Query: 361 acagtggttggttcacagtagaaatagattgttgattcaatggctgcatgggtcgtattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagtggttggttcacagtagaaatagattgttgattcaatggctgcatgggtcgtattt 620

                                                                       
Query: 421 gcctctgtgttcgaggagtgtgggcgttctgtgtgaatgatgatctggaaagtactctga 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctctgtgttcgaggagtgtggacgttctgtgtgaatgatgatctggaaagtactctga 680

                                                                       
Query: 481 accagacaaacatagatttggcttctgtctgaatcttgggctaacccctagtcatgattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accagacaaacatagatttggcttctgtctgaatcttgggctaacccctagtcatgattg 740

                                                                       
Query: 541 ttgcctagaccttcagtaaatgattctactagctgtcaagagcattaggcactggcagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgcctagaccttcagtaaatgattctactagctgtcaagagcattaggcactggcagca 800

               
Query: 601 ataa 604
           ||||
Sbjct: 801 ataa 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no316_j16.g1 MSMg01no316_j16.g1 CHROMAT_FILE:
MSMg01no316_j16.g1 PHD_FILE: MSMg01no316_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:23 2005
         (572 letters)



>mm_chrX_68201650_68202621
          Length = 972

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 103 tttatcatctgattccaaggtggctggtttttacacacattactgaaccatacctcatag 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 tttatcatctgattccaaggtggctggtttttacacacattactgaaccatacctcatag 913

                                                                       
Query: 163 gcgcctagattatgaatatagcctgtggttctacaaggttggtctccagtgtcctggggc 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 gcgcctagattatgaatatagcctgtggttctacaaggttggtctccagtgtcctggggc 853

                                                                       
Query: 223 taacagtgttctggtagcatttcctaattaccctagtgtaaatactcgcatcacaaagca 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 taacagtgttctggtagcatttcctaattaccctagtgtaaatactcgcatcacaaagca 793

                                                                       
Query: 283 tgattttaaacagcaacatgctgacaactgttcattttcattaacctgtctgaaatgaca 342
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 792 tgattttaaacagtaacatgctgacaactgttcattttcattaacctgtctgaaatgaaa 733

                                                                       
Query: 343 cactcatctttgagaagtaggggagactagcctaaacacatagctgcctaagccaaaaat 402
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tactcatctttgagaagtaggggagactagcctaaacacatagctgcctaagccaaaaat 673

                                                                       
Query: 403 gaagcagtctactgtgagctaagaggcagaagttcttgtccaataacagttctattgaag 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaagcagtctactgtgagctaagaggcagaagttcttgtccaataacagttctattgaag 613

                                                                       
Query: 463 cacacttcttattacctcttctgagcctctatttccccaagtgtcaaatcaccaagattt 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cacacttcttattacctcttctgagcctctatttccccaagtgtcaaatcaccaagattt 553

                                                             
Query: 523 ctgttctatttcttcaaaggccatggagtatcatgagccaatggacaggg 572
           ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgttctgtttcttcaaaggccatggagtatcatgagccaatggacaggg 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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