BAC Information

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BAC

Clone NameMSMg01-317B16
ChromosomeX (Build37)
Map Location 163,210,979 - 163,211,145
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040753, Gemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912
Downstream geneLOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317B16.T7 (MSMg01no317_b16.b1)MSMg01-317B16.TJ (MSMg01no317_b16.g1)
ACCAG437269AG437270
length722741
length of high quality
(start - end)
168 (436 - 603)254 (429 - 682)
definitionCHROMAT_FILE: MSMg01no317_b16.b1 PHD_FILE: MSMg01no317_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:03 2005CHROMAT_FILE: MSMg01no317_b16.g1 PHD_FILE: MSMg01no317_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCAAATTTGGGCGCTAATACGATCCTATTTCCGAGGGGAGGGAATCAA
GGGTGACGAAAAGAGGAGAGCTTGTTCAGGGGGGAGGGGGAGGGCTGGCT
GCATTCCGGCGCCTCAAGGGAACTGGGGGTGAGAGCACCTGTCCACGTGA
TAATCTTCGACCAGCCTGCCATGAAGCAATTCTCTCATTCCCGAGTAAGG
ACAGAACCTCTCCCCACTCAGTACATCATGTCTGTCCCCTTCTTGATGCC
TTACTGTCTTCCTATCATCTGTGCTTTGTAAATCACTGGATATTTATGTA
GATANTTTCAAGGCTTTTAACATCTCCCACATTTGTGCACCCTGTTTTAG
CATGCACCCCCCCCCTCTTCAGCTTCAAAATTAAAAATTATGCAACTACT
CCCCACAACTGAACATGGTTATGGGATTAAGTGTAATCCTTTATTAAGTG
AATTGGAGATTCTGGGTTTACTCAGTTCCTTAGGGATTTTTTGCCCCAGA
AAACATGCACTAGATAAATGGTCCCCACTACCAACATGCAAATTACTTCA
AGCAAAAGTCCTTTAAACTTAGCAGGAAAAAACCTTAAGAGGCAAAGGGT
ACATCCATTACCAATAAAGGAATCCTGTGTTTCTGCCTGTTTACTGCCCT
TTTTCTTTTATTGTGAATAAGAGCAGGAAACTCTTCACACTCTGGATTAT
GGTGACCGGGTTTAAGTCATGA
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGAGAGGAGTATTTAGGAAAG
CTTGCCCAAACAGTACTCAGACCATCCATTAGCTCTAGGGATACGGTGTT
TTCTAAAGGACTCTGTCTGCTTCAGAGTCGGGTGAGGGAGTTAGTATTTA
TGCCATGGCCCAGGGCAAGACTTATTGCATAATTGGTTCACAGTAAGATC
AAGGTGACCTTGGAGAAAGCTGCCTAGATGTTTCTTTATGCCTGCACCTT
ATTGCCAAAGCATCTCTTCTTCATGATGTTCGACCCTAACTCATGTTGAG
GCTCTACTACAGGTTTACTGCTAAGACTTATTTCTATTTTATTGATGTGT
CTGTGTGAGTGTATACGGCCACCTGTGGAGGCCAGAAGAGGGCACTGATC
CTCTGGAGTTGGAGTTAAAGGAGATGTGAGCCACCTGACATGCTGGGAAC
TGAACTCAGTTCCTCCAGAAGAGAAACATAGTGCTCCTAACTGTTTAGCC
ATCTCTCCAGACCTGAATTTTCATTTTTTATTATTTAATTCTCTCTCTCT
CTCTGTGAGTGAGTGTGTGTGTGTCTGTATGTGTCTGTGTCTGTGTCTGT
GACTGTCAGTATGTGACCTCAGTTGTCTGTGAAGACCAAAGGCAATAACT
TCCAGAGCTGGAGAGCAGGCTGTTGTGAACTGCCCAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_b16.b1 MSMg01no317_b16.b1 CHROMAT_FILE:
MSMg01no317_b16.b1 PHD_FILE: MSMg01no317_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:03 2005
         (168 letters)



>mm_chrX_163210779_163211345
          Length = 567

 Score =  302 bits (156), Expect = 9e-87
 Identities = 165/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctttattaagtgaattggagattctgggtttactcagttccttagggattttttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 atcctttattaagtgaattggagattctgggtttactcagttccttagggattttctgcc 308

                                                                       
Query: 61  ccagaaaacatgcactagataaatggtccccactaccaacatgcaaattacttcaagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccagaaaacatgcactagataaatggtccccactaccaacatgcaaattacttcaagcaa 248

                                                           
Query: 121 aagtcctttaaacttagcaggaaaaaaccttaagaggcaaagggtaca 168
           ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 247 aagtcctttaaacttagcaggaaaaaa-ctaaagaggcaaagggtaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 567
Length adjustment: 8
Effective length of query: 160
Effective length of database: 559
Effective search space:    89440
Effective search space used:    89440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)