BAC Information

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BAC

Clone NameMSMg01-317L23
ChromosomeX (Build37)
Map Location 35,904,067 - 35,904,305
singlet/doubletsinglet
Overlap geneCul4b
Upstream geneEG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495
Downstream geneMcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317L23.T7 (MSMg01no317_l23.b1)MSMg01-317L23.TJ (MSMg01no317_l23.g1)
ACCAG437731AG437732
length730738
length of high quality
(start - end)
679 (48 - 726)348 (78 - 425)
definitionCHROMAT_FILE: MSMg01no317_l23.b1 PHD_FILE: MSMg01no317_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:47 2005CHROMAT_FILE: MSMg01no317_l23.g1 PHD_FILE: MSMg01no317_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCCCATACCCAAACATGATAAAAGCAATCTACAGCAAACC
AGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA
AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATA
GTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGG
GATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATA
TGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAAC
CTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAA
GTCAATGGCCTTTCTCTACACAAAGAACAAACAGGCTGAGAAAGAAATTA
GGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGC
GTGACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATC
TCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCAT
GCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAA
GCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTT
CAACGAATTGGAAGGAGCAATTTGCAAATN
AAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAGAACATAAGTTCTATCCAG
AAACAAAAAAATGCTCCTGATCATTACCTGTCAAATAAGAAGGAAAAAAA
AAATCAAGCAATTTTTGTAAATTTGAATCTTCAGTATTAGCTCTTAAAAT
AAGAATTTGGAAGATTTTACATTAAATAGACTACTAGGATCCAACTTAAC
AAATAGATAAATGTATCTGAGATGTCCCATATATTTATCTTTAAACTATT
CTATTAATCCTTGTGGTTTCTAGAGAACAGAGAATTAAGATGGTCCTCTG
ACATCTTTGTTACTTATATTGAAAAGAAAAACTGGAGGTAGGCATGGGGT
GCATGCCTATAATCCCAGAACTCAAGACGCTAAGAAAGACAGAAAGATCT
TGAATTTCAGGCCAGCCTGTACTACATAAGGTGATCTTGTCTCAGAAAAA
AAAAAAGAGGGAATCCAAGGTACACTTAGTCTTCCTTAGCAGCAGTGCTA
GGGGGTAAAGCTATCTTAAACGTGTGCCCATGGTATTTAGAAGGTGGAAA
GTGGATTTCAAGATTTCTACTTGCATTAATATAAAGAATAAATTCCAGAC
TTTACCACTCAGCTATATCCCAATTCTTCCAGGAAAGCTATCAAAAACAT
TCTACCACCTCAATGTTTCTGAACTCAAGTACTGCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_l23.g1 MSMg01no317_l23.g1 CHROMAT_FILE:
MSMg01no317_l23.g1 PHD_FILE: MSMg01no317_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:47 2005
         (348 letters)



>mm_chrX_35903965_35904713
          Length = 749

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%), Gaps = 1/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagaacataagttctatccagaaacaaaaaaatgctcctgatcattacctgtcaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 103 tgaagaacataagttctatccagaaacaaaaaaatgctcctgatcattatctgtcaaata 162

                                                                       
Query: 61  agaaggaaaaaaaaaatcaagcaatttttgtaaatttgaatcttcagtattagctcttaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agaaggaaaaaaaaa-tcaagcaatttttgtaaatttgaatcttcagtattagctcttaa 221

                                                                       
Query: 121 aataagaatttggaagattttacattaaatagactactaggatccaacttaacaaataga 180
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 222 aatgagaatttggaagattttacattaaatagactactaggatccaacttaacaaataaa 281

                                                                       
Query: 181 taaatgtatctgagatgtcccatatatttatctttaaactattctattaatccttgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taaatgtatctgagatgtcccatatatttatctttaaactattctattaatccttgtggt 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 749
Length adjustment: 9
Effective length of query: 339
Effective length of database: 740
Effective search space:   250860
Effective search space used:   250860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)