BAC Information

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BAC

Clone NameMSMg01-319B23
ChromosomeX (Build37)
Map Location 86,706,752 - 86,707,386
singlet/doubletsinglet
Overlap geneEG629419
Upstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319B23.T7 (MSMg01no319_b23.b1)MSMg01-319B23.TJ (MSMg01no319_b23.g1)
ACCAG438732AG438733
length761722
length of high quality
(start - end)
---635 (75 - 709)
definitionCHROMAT_FILE: MSMg01no319_b23.b1 PHD_FILE: MSMg01no319_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:25 2005CHROMAT_FILE: MSMg01no319_b23.g1 PHD_FILE: MSMg01no319_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAAAGGGGGGGCCAAGGNNNNCCCCTTGCCGACCGCNNNNNNGNGNNN
NNTGACCTGACCCGNNNNGNNNGNNGGNGNNNNNNNNNNGGGGAGGGGGG
GGGTGGGGCCCGGGGGNGGGNGGGGGGGGGGGGGGGGGGGGGGGNNGGGG
GGGGGGGGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGTTTTGNNNGGGGGGGGGGGGGGG
GGGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNGAGGTGGGGNG
NNGNGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGCCCCCCCCCCCCCCCG
GNGGGGGGGGNGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGTGAAAAAA
AAAAAAAAAAAAAATNGGGGGGGGGGGGGTGGGTGGGAAAAGAAAAAGAA
GAAGGAGAAGGGGAAAGGGAGGAGGAAGGAAGAAGGAGAAGAAGGAGAGA
GGAGAGAGGGAGNAGGAGGAAGAAAAAAGGGAAAAAGGAGGAGAAAGATA
GAGGTGAGAGAGAAGAAGAAGAGAAAGGNGAAGAGAGAAGAGGAAGGAAA
GAGGGAGGAGGAGAAGAGAGAAAGAAAGAAAGGAAGAGAGGGAAGAGGAG
GAAAANAGAAGGGAGGAGGGGAGAAAAAGAGAAAAAGAGAAAAAATGTAT
ATGTGTAAAGAGAGGGGGGAGAAAGGAAGAAGAAAAGAGGGAGAGAAAGG
AAGGAAGAAAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTACAGACCATGCTGACCTTAAA
ATGACAGAGATCATCCTAGCTCTGCCTCTAGAGTTTTGTTGTATTTTTAA
ATTAAAACATTTATCCATGAACTGGAGATGTAGCTCAGTGCTGAAATACT
TTCCTATCTGATACAGGGCCCCAGATTTAATCCTTAACACTACAAATAAA
ACAAACCTACAACAACAAAGCTCTGTCTTCCAAAATATGGTATTCACGTA
TTCAATGACCATGAGGTGGACTTTTTCAAACATCTATACTTTTAACAGAT
ATCATAGTTCTTAATACTAGTCATTCATTGTTTGTAGAAAATGGCTTTTC
TCTCTCTTTTATACCAGAATCAAGTTCTTTTCACAGATATGGGTAAGACA
TTGGTTTATTAATTTTGGCATTCTCAAAATCTAGAATAAATTGAGTATAT
TCATGTCTGCTGAACCGAACACTCTAATTCCACATTCAGCAATTTAGATA
AAGCTAACTAGAATCATACACTCTTCTATAATCATGTTTCTGCAATCTCA
TTAAAAATACACTGTACACTACAGCCACTTACCTTTGTAAACTGTTGAAC
TAGTCATCTTTTTTCACAGAGGAATCCAACAATAGTTAGTTTAGGTAGGA
TTGCAAGAAAAGCAGAAATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_b23.g1 MSMg01no319_b23.g1 CHROMAT_FILE:
MSMg01no319_b23.g1 PHD_FILE: MSMg01no319_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:25 2005
         (635 letters)



>mm_chrX_86706552_86707586
          Length = 1035

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttacagaccatgctgaccttaaaatgacagagatcatcctagctctgcctctagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttacagaccatgctgaccttaaaatgacagagatcatcctagctctgcctctagagt 260

                                                                       
Query: 61  tttgttgtatttttaaattaaaacatttatccatgaactggagatgtagctcagtgctga 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tttgttgtatttttaaattaaaacatttatccatgaactgaagatgtagctcagtgctga 320

                                                                       
Query: 121 aatactttcctatctgatacagggccccagatttaatccttaacactacaaataaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatactttcctatctgatacagggccccagatttaatccttaacactacaaataaaacaa 380

                                                                       
Query: 181 acctacaacaacaaagctctgtcttccaaaatatggtattcacgtattcaatgaccatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctacaacaacaaagctctgtcttccaaaatatggtattcacgtattcaatgaccatga 440

                                                                       
Query: 241 ggtggactttttcaaacatctatacttttaacagatatcatagttcttaatactagtcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggactttttcaaacatctatacttttaacagatatcatagttcttaatactagtcat 500

                                                                       
Query: 301 tcattgtttgtagaaaatggcttttctctctcttttataccagaatcaagttcttttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcattgtttgtagaaaatggcttttctctctcttttataccagaatcaagttcttttcac 560

                                                                       
Query: 361 agatatgggtaagacattggtttattaattttggcattctcaaaatctagaataaattga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatatgggtaagacattggtttattaattttggcattctcaaaatctagaataaattga 620

                                                                       
Query: 421 gtatattcatgtctgctgaaccgaacactctaattccacattcagcaatttagataaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatattcatgtctgctgaaccgaacactctaattccacattcagcaatttagataaagc 680

                                                                       
Query: 481 taactagaatcatacactcttctataatcatgtttctgcaatctcattaaaaatacactg 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taactagaatcatacacttttctataatcatgtttctgcaatctcattaaaaatacactg 740

                                                                       
Query: 541 tacactacagccacttacctttgtaaactgttgaactagtcatcttttttcacagaggaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacactacagccacttacctttgtaaactgttgaactagtcatcttttttcacagaggaa 800

                                              
Query: 601 tccaacaatagttagtttaggtaggattgcaagaa 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 tccaacaatagttagtttaggtaggattgcaagaa 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)