BAC Information

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BAC

Clone NameMSMg01-319G08
ChromosomeX (Build37)
Map Location 115,064,456 - 115,064,824
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039319, LOC624284, LOC665066, EG624388
Downstream geneENSMUSG00000072994, LOC100039551, Tgifx1, LOC665087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319G08.T7 (MSMg01no319_g08.b1)MSMg01-319G08.TJ (MSMg01no319_g08.g1)
ACCAG438931AG438932
length711712
length of high quality
(start - end)
372 (45 - 416)235 (125 - 359)
definitionCHROMAT_FILE: MSMg01no319_g08.b1 PHD_FILE: MSMg01no319_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:44 2005CHROMAT_FILE: MSMg01no319_g08.g1 PHD_FILE: MSMg01no319_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCATATTCCATTTTAAGACTTTTTAGTGCAAGTGTACACACAAGT
ATTTGTGTGTGTGTGTGTTTAAGTTTCTATGTTTGTCAGGGCTGTGTGTG
AAGTATATGTTCCAATGAGGGTACCAAGAAGACTCCTTTATCTTTTTCCA
ACTTGTTCCTTTGAGGCAGTATCTCTATATGAACATGAAGCTTACATTTC
CCACTAGGCTAACCTCATAAATCCTATTGTCTCTGACTGCTTCAATGGCA
AGTGGGTTTTAAATGGGTGCTAGATTCAAATATCAGTACTCTTAGTTGTG
CTGAAAGTGCATATAATCATGGAGCAATTTGTCCAGCTCCTTAAAACATT
TAAATTCATATACTTGACCCCCCCGTTACTTCTAACAACATAATAACTAA
TTTTAAAGGGCATAACTAGTTGCAAAATAAACCATTCAGTTATTTTCTGC
TGTAATATAACACATATGGAGATATTATTATATGCACCAATTGTTTGATT
TAAGGGTTGCTATCTACTTCTAAGGTAGTAACTCTTTATTTACCTTGACT
CATAGGAAAATTCCACAGAAAGCTAAGTGGATTGCCTCAGTTTCTTTTCA
CTATTATACCATTTTTTAAACAAAATGTACATGTTGAATTTTTATATGAA
CTATGAACTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGGTGGAATTTTTGGAGTTACTTAT
GTATAATATTATATCTTCGCCGCCTTAGTCAGGGTCTCTATTCCTGCACA
AACATCATGAACAAGAAACAAGTTGGGGAGGAAAGGGTTTATTCGGCTTA
CACTTCCATACTGCTGTTCATTACCAAGGAAGCCAGGACTGGAACTCAAG
CAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGCTTTACT
GGCTTGCCTCCCCTGGCTTGCTCAGCCTGCTTTCTTATAGAACCCAAGAC
TACCAGTCCTTTATATGGTCCCACCCACAAGGGGCCTTTCCCTCTTGATC
ACTAATTGAGAAAACGCCCCCCAACAGAATCTCATGGAGGCATTTCCTCA
ACTGAAGCTCCTTTCTCTGTGATAACCCCAGCTGTGTCAAGTTGACACAA
AACTAGCCAGTACAATCGGCAAATAGTGATATTTTGACTTATTGTTTACT
AATTTGAATCTGTTGGACTTACTTTTGTTTTCTAATTGATTTAGCTAAAA
CTTCACGTACTATATTATATAGGTAGGGAGAAAGCGGGCAGCTTCTCATC
CACGTGAACCTAGGATATCTATATAAAGTCAAATACCCTGGTAACTCGTA
AAAGTTAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_g08.b1 MSMg01no319_g08.b1 CHROMAT_FILE:
MSMg01no319_g08.b1 PHD_FILE: MSMg01no319_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:44 2005
         (372 letters)



>mm_chrX_115064252_115065024
          Length = 773

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatattc-cattttaagactttttagtgcaagtgtacacacaagtatttgtg 63
           |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatattcatattttaaaactttttagtgcaagtgtacacacaagtatttgtg 264

                                                                       
Query: 64  tgtgtgtgtgtttaagtttctatgtttgtcagggctgtgtgtgaagtatatgttccaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtgtgtgtttaagtttctatgtttgtcagggctgtgtgtgaagtatatgttccaatg 324

                                                                       
Query: 124 agggtaccaagaagactcctttatctttttccaacttgttcctttgaggcagtatctcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggtaccaagaagactcctttatctttttccaacttgttcctttgaggcagtatctcta 384

                                                                       
Query: 184 tatgaacatgaagcttacatttcccactaggctaacctcataaatcctattgtctctgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgaacatgaagcttacatttcccactaggctaacctcataaatcctattgtctctgac 444

                                                                       
Query: 244 tgcttcaatggcaagtgggttttaaatgggtgctagattcaaatatcagtactcttagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcttcaatggcaagtgggttttaaatgggtgctagattcaaatatcagtactcttagtt 504

                                                                       
Query: 304 gtgctgaaagtgcatataatcatggagcaatttgtccagctccttaaaacatttaaattc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgctgaaagtgcatataatcatggagcaatttgtccagctccttaaaacatttaaattc 564

                    
Query: 364 atatacttg 372
           |||||||||
Sbjct: 565 atatacttg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)