BAC Information

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BAC

Clone NameMSMg01-320J01
ChromosomeX (Build37)
Map Location 130,129,954 - 130,216,963
singlet/doubletdoublet
Overlap genePcdh19
Upstream geneLOC665846, LOC665850, LOC665854, LOC100040794
Downstream geneLOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J01.T7 (MSMg01no320_j01.b1)MSMg01-320J01.TJ (MSMg01no320_j01.g1)
ACCAG439765AG439766
length710719
length of high quality
(start - end)
318 (45 - 362)234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no320_j01.b1 PHD_FILE: MSMg01no320_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:06 2005CHROMAT_FILE: MSMg01no320_j01.g1 PHD_FILE: MSMg01no320_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,129,954 - 130,130,264)(130,216,730 - 130,216,963)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAAGCACTTTCAAGGCCTTCAGAATCCAAAGAAAGGACAACTAT
TCTGTGTCTATAACTTGACAAAGCACTCAGAGCACTAATGAGCTCCATGG
AAAAAGAAGCCAGGACAGGGATGGTGAAAAGGGGATAAGAGCAGGAACCA
CTGTGTGGGGCTCAGATACTCTGTGCTTGATATTTTGAGAACTGGCTTTC
CTTGGATGTCAAGATACAAGGAGAAAAGTACCTCTTCTAATTATCTAGAA
AAAAAAATTCAGTGAAGACTTAAGGACAACTCAAAGCCATAGGGGAGTGG
AATTGCAAATAGTTTATAAAGCGCACAATTAGCCACACGAGACAGTATTC
CTTCTGAACAACATGTGTGGGATATGTATGAAGGCTGAGACAGTTTTCCA
GACTTAGGAGCCAGTAGTACTAAGCCATCCTGCAGCCAGTCTAATTCTGA
TGATGCTAACAGCTATTTGTATCTTACCCCCTTCTGCCTTTATTCCTTCC
TTAAATCATTAATTTTTGTTGTCCTCTTCCCTAGCCTCCTACTTCCAATC
ACTCCTTACTATACTCAGATACACATCAGACAGAATTAGCAGGGTGGCAG
AACTCTGACATTTGNAAATACTGGTGTGTTGTTATTTAATAGATATCAAA
ATGTGCTCCC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGACAATAAGCTGAAATCATTA
TGTGCAAAGTAATACATTATATCCCAAAATCTGACTACCTTTTAACGTAT
TTCTTTTGACAAGTCTCTTAATGCTTGGTGTCTTTGGTGCACGTTCCTGG
GTCTGTGTCAGTGTTAATTAAATTGAGCTTTTTATGTTCCAGTTGCAGCA
CAGCTGCTTGTAGGTACACCTGAATGGAGAAGGATGCTGAATGCACTAAC
CTTTAAATTCCTTTGCAGTAATTGTTTAACCATCACTTGTCTCCTCGGCT
GTTTTATAAAATTGTTTAAACACCCCCTGTCTGCATTGCATCTCGGTTTC
TCCCAATAGTGAGGAGCAAGACAAAAAGGCAGAGGAGAAAGTGAGCCTAA
GGGGAAAGAGGTAAAAAGGCATTTTCCCCTCATTCAAATGGGTTTGGCTA
TCAGATTTCTCTAGGAGAGGAGGGGGAAGGGTGGAAAGTAGAAGGGAGCT
GGGCTAGGGCAGGGAGGAGGGTGTGGGTGAGCAGAATTAGGTGCTCTTAG
AGGACAGGGTGTGAACCTCTACTCTAGTCTAAAAGTGATCAGTTTAATGA
CAGAGGAAGCTGATTCATGGTATTTGCCACATTGCAAATTCCTGGAGGCA
TTGGCAAGGGTTTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j01.b1 MSMg01no320_j01.b1 CHROMAT_FILE:
MSMg01no320_j01.b1 PHD_FILE: MSMg01no320_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:06 2005
         (318 letters)



>mm_chrX_130129750_130130467
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaaagcactttcaaggccttcagaatccaaagaaaggacaactattctgtgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaagcactttcaaggccttcagaatccaaagaaaggacaactattctgtgtc 264

                                                                       
Query: 65  tataacttgacaaagcactcagagcactaatgagctccatggaaaaagaagccaggacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataacttgacaaagcactcagagcactaatgagctccatggaaaaagaagccaggacag 324

                                                                       
Query: 125 ggatggtgaaaaggggataagagcaggaaccactgtgtggggctcagatactctgtgctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 ggatggtgaaaaggggataagagcaggaaccactgtgtggggctcagatactcggtgctt 384

                                                                       
Query: 185 gatattttgagaactggctttccttggatgtcaagatacaaggagaaaagtacctcttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatattttgagaactggctttccttggatgtcaagatacaaggagaaaagtacctcttct 444

                                                                       
Query: 245 aattatctagaaaaaaaaattcagtgaagacttaaggacaactcaaagccataggggagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattatctagaaaaaaaaattcagtgaagacttaaggacaactcaaagccataggggagt 504

                      
Query: 305 ggaattgcaaa 315
           |||||||||||
Sbjct: 505 ggaattgcaaa 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no320_j01.g1 MSMg01no320_j01.g1 CHROMAT_FILE:
MSMg01no320_j01.g1 PHD_FILE: MSMg01no320_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:06 2005
         (234 letters)



>mm_chrX_130216530_130217163
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatctgactaccttttaacgtatttcttttgacaagtctcttaatgcttggtgtctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaatctgactaccttttaacgtatttcttttgacaagtctcttaatgcttggtgtctttg 375

                                                                       
Query: 61  gtgcacgttcctgggtctgtgtcagtgttaattaaattgagctttttatgttccagttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtgcacgttcctgggtctgtgtcagtgttaattaaattgagctttttatgttccagttgc 315

                                                                       
Query: 121 agcacagctgcttgtaggtacacctgaatggagaaggatgctgaatgcactaacctttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agcacagctgcttgtaggtacacctgaatggagaaggatgctgaatgcactaacctttaa 255

                                                                 
Query: 181 attcctttgcagtaattgtttaaccatcacttgtctcctcggctgttttataaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 attcctttgcagtaattgtttaaccatcacttgtctcctcggctgttttataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)