Query= MSMg01no321_c05.b1 MSMg01no321_c05.b1 CHROMAT_FILE:
MSMg01no321_c05.b1 PHD_FILE: MSMg01no321_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:48 2005
(284 letters)
>mm_chrX_38924543_38925226
Length = 684
Score = 516 bits (267), Expect = e-151
Identities = 279/283 (98%)
Strand = Plus / Minus
Query: 1 catctaccacaaggcaactgaggtatctatggttactcaagcaagaccaaaaccttctaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 483 catccaccacaaggcaactgaggtatctatggttactcaagcaagaccaaaacattctaa 424
Query: 61 actccaactcaatattatttttcaatctgcagtcaacatgcatgaccacagttgtttgca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 423 actccaactcaatattatttttcaatctgcagtcaacatgcatgagcacagttgtttgca 364
Query: 121 gatgtataaagaaagcataatatattgtgtacttgaagatcaaacattatttcacttttg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 363 gatgtataaagaaagcataatatattgtttacttgaagatcaaacattatttcacttttg 304
Query: 181 ttagatctgtttttgctccatgtgagttaagatctgaaaaactttgtttttgatgtccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttagatctgtttttgctccatgtgagttaagatctgaaaaactttgtttttgatgtccta 244
Query: 241 gtcatatattttcttaatgtttattaaggacaagagtttttag 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtcatatattttcttaatgtttattaaggacaagagtttttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_c05.g1 MSMg01no321_c05.g1 CHROMAT_FILE:
MSMg01no321_c05.g1 PHD_FILE: MSMg01no321_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:48 2005
(476 letters)
>mm_chrX_38754448_38755322
Length = 875
Score = 882 bits (456), Expect = 0.0
Identities = 471/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 1 tttttctttttctattattattttgacgactcccgagttgcgcccatgctcttgtcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttctttttctattattattttgacgactcccgagttgcgcccatgctcttgtcagct 260
Query: 61 tcgttttaggcgtagcacagccaggcagaagaaaatggggcaaaacgtgctccgggcggt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tcgttttaggcgtagcacagccaggcagaagaaaatggggcaaagcgtgctccgggcggt 320
Query: 121 cttctttttagtcctggggcttttgggtcattctcacggaggattccccaacaccatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctttttagtcctggggcttttgggtcattctcacggaggattccccaacaccatcag 380
Query: 181 cataggtaagctccccagagccagccagagggggccaggctcttctgcatttgaaaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataggtaagctccccagagccagccagagggggccaggctcttctgcatttgaaaccca 440
Query: 241 ctaccctattggggctgggggtatcgcaacatgagtccctgtcctgcatggtttggggac 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaccctagtggggctgggggtatcgcaacatgagtccctgtcctgcatggtttggggac 500
Query: 301 ggtgtctagggatgggggactgagctgagatattggagacccgcacctgcaaagaactga 360
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 501 ggtgtctagggatgggggactgagctgagatattggagacctg-agctgcaaagaactga 559
Query: 361 cgagtatggggagcatccaagatgagggaaggggtctcccggggctaatgcgggtggacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cgagtatggggagcatccaagatgagggaaggggtctcccggggctaatgcgggtggacg 619
Query: 421 gccaggttttctgaccgaggagcaagggagtcaagctggaggttgggatgctgcaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gccaggttttctgaccgaggagcaagggagtcaagctggaggttgggatgctgcaa 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
