Query= MSMg01no321_o24.b1 MSMg01no321_o24.b1 CHROMAT_FILE:
MSMg01no321_o24.b1 PHD_FILE: MSMg01no321_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:47 2005
(655 letters)
>mm_chrX_138447774_138448828
Length = 1055
Score = 1189 bits (615), Expect = 0.0
Identities = 648/665 (97%), Gaps = 10/665 (1%)
Strand = Plus / Minus
Query: 1 ccacatcttttctctcttctgtaaagtccatatgctacatcgagttgtcatcttcctaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ccacatcttttctctcttctgtaaagtccatatgctacatcgagttgtcatcttcctaag 970
Query: 61 gcattgagaaactgttttttgtttgtttgtgtgtttgtttttgaaagctctatccatgaa 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 969 gcattgagaaactgttttttgtttgtttgtttgtttgtttttgaaagctctatccatgaa 910
Query: 121 cactcctcagtaccatcaccttgattgcaagatactggattttg----------tttgta 170
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 909 cactcctcagtaccatcaccttgattgcaagatactggattttgtttgtaccactttgta 850
Query: 171 ccaggaagaaaggctctagttcccaccaagtactgtcatgtgtcaggggttgggaagaaa 230
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 849 ccaggaagaaaggctctagttcccaccaagtgctgtcatgtgtcaggggttgggaagaaa 790
Query: 231 tccttagtacttggatctgggtctgatcattattgtagaaatgagagcactgttacaagt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tccttagtacttggatctgggtctgatcattattgtagaaatgagagcactgttacaagt 730
Query: 291 cctgtgactcaaacaccagtgctcccagaacaacatcaacattccatccttttctattac 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cctgtgactcaaacaccagtgctcccagaacaacatcaacattccatccttttctattat 670
Query: 351 gcccagcttctgaatagtctgaagtaggataaccaaacaaattaggatataatcgatata 410
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtccagcttctgaatagtctgaagtaggataaccaaacaaattaggatataatcgatata 610
Query: 411 ctcttaaaataggcataatgactaaatcaagacagcaggagtgagctgaattttcttcaa 470
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctctttaaataggcataatgactaaatcaagacagcaggagtgagctgaattttcttcaa 550
Query: 471 taaatcaaaggactgggttccttaacctggaagtcacagaagctctttaaatctctaaga 530
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 549 taaatcaaaggactgggttccttaacctggaagtcactgaagctctttaaatctctaaga 490
Query: 531 tgtgggtccacagtggtgaatactattctatgcctacttgtgacaacattgggatgctga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgtgggtccacagtggtgaatactattctatgcctacttgtgacaacattgggatgctga 430
Query: 591 acagagttgtccaggacaggacaataaagtgaagaagtctacaagctagtattctcattt 650
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 429 acagagttgtccaggacaggacaataaagtgaagaagtctactagctagtattctcattt 370
Query: 651 agata 655
|||||
Sbjct: 369 agata 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_o24.g1 MSMg01no321_o24.g1 CHROMAT_FILE:
MSMg01no321_o24.g1 PHD_FILE: MSMg01no321_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:47 2005
(585 letters)
>mm_chrX_138286701_138287685
Length = 985
Score = 1093 bits (565), Expect = 0.0
Identities = 580/585 (99%)
Strand = Plus / Plus
Query: 1 atacatgtagatataagaagctcaggctgcacaagttacctatccaaagcagctagctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacatgtagatataagaagctcaggctgcacaagttacctatccaaagcagctagctag 260
Query: 61 tagactcttatcttgggatctgcttcaccctgaggtctgtgtgctgcacactgggctagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagactcttatcttgggatctgcttcaccctgaggtctgtgtgctgcacactgggctagt 320
Query: 121 actttccctgctctcttcctctcttcctgtggaccctctgacagtataaataaactaaat 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 321 actttccctgctctcttcctctctccctgtggaccctctgacagtataaataaattaaat 380
Query: 181 agaaacactgtgatcattttgttaaattaaaaaatatatgcaactggctgtgaacccttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaacactgtgatcattttgttaaattaaaaaatatatgcaactggctgtgaacccttg 440
Query: 241 acaagggcacctctttcaataaatgtttctggcatgcctatcttccttcctgctttacag 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 acaagggcacctctttcaataaatgtttctggcatgcctgtcttccttcctgctttacag 500
Query: 301 agaagaaattcttaacccgctgtattattttctctgcccagttcctgcaaaatcccaata 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 agaagaaattcttaacccgctgtattattttctctgcccagttcctgtaaaatcccaata 560
Query: 361 aataggtaataagaatgttcattcttgggacagggtgaggggagggtataggggactttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataggtaataagaatgttcattcttgggacagggtgaggggagggtataggggactttt 620
Query: 421 gagatagcatttgaaatgtaaatgaagagaatatctcttgtgagactaggctggggccta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagatagcatttgaaatgtaaatgaagagaatatctcttgtgagactaggctggggccta 680
Query: 481 gcaaacacataagtagatgctcacagtcagctattggatggagcacagggcccccaatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaaacacataagtagatgctcacagtcagctattggatggagcacagggcccccaatgg 740
Query: 541 aggagctagagaaagtagccaaggagctaaagagatctgcaaccc 585
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 aggagctagagaaagtatccaaggagctaaagagatctgcaaccc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
