CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAACTTGTCACATGTTACCTTGTATTTTCTTTTAGACTCTGGTTTA
CAAGTAAATTAAGATTTCATATTAATTAAATCATCAGAGAATGTCCTAGC
CCCCAATGAATGTGTTGAACCATGTGTCATCTCTACAAAGGCAGACACTA
TTACTATTATATTCCTTTTCTACTATAAAGCTCATCTTTAATTCTAAACT
GTGTCCTTAACCTCATAATAAGAATATGTATGTGTATGCATGTGTGTGTA
TACACATATACACAAGCACACACATAATACACCCTGGTAGAATTATAATA
CTTGATTTAAAATACTAAAAAGTTATAGTAATAAAGCAGTATGATGCTAT
TACTAAAATAGAGAATTATCACAGAATAGAGAACTCAGAATTAAATTCAA
GCTTACAAACAGTTGGGAACATTCTGATAACAACATAAAATTTTAGTTAG
ACTGAAAGTATAAACTCAAGTGATCTATTATAAAAGACAGTGACTGCAGC
TGATATTTTATTGTCTTCTTGAAAATCATTAAGAGAATAGATTTCAAGTG
TGTCTCATAACTTTACTAGATAATATAAATATTAATGAGGTCAATATAGC
TATTCTTCAACTGGGCACATATTTTGAAGCATGTTATTTTAAGCAAGAGA
TGAGCAAATGTTTAACAATTAATAT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCAAACTGGTAAG
AAGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
AGTGGTACATCTACACAATGGAGTACTACTCAACTATTAAAAAGAATGAA
TTTATGAAATTCTTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCGCACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGAAACTCAAGAAAAATGAAG

Query= MSMg01no322_a05.b1 MSMg01no322_a05.b1 CHROMAT_FILE:
MSMg01no322_a05.b1 PHD_FILE: MSMg01no322_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:53 2005
         (681 letters)



>mm_chrX_62270345_62271425
          Length = 1081

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacttgtcacatgttaccttgtattttcttttagactctggtttacaagtaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacttgtcaaatgttaccttgtattttcttttagactctggtttacaagtaaa 264

                                                                       
Query: 65  ttaagatttcatattaattaaatcatcagagaatgtcctagcccccaatgaatgtgttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaagatttcatattaattaaatcatcagagaatgtcctagcccccaatgaatgtgttga 324

                                                                       
Query: 125 accatgtgtcatctctacaaaggcagacactattactattatattccttttctactataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accatgtgtcatctctacaaaggcagacactattactattatattccttttctactataa 384

                                                                       
Query: 185 agctcatctttaattctaaactgtgtccttaacctcataataagaatatgtatgtgtatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctcatctttaattctaaactgtgtccttaacctcataataagaatatgtatgtgtatg 444

                                                                       
Query: 245 catgtgtgtgtatacacatatacacaagcacacacataatacaccctggtagaattataa 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 catgtgtgtgtatacacatatacacaaacacacacataatacaccctggtagaattataa 504

                                                                       
Query: 305 tacttgatttaaaatactaaaaagttatagtaataaagcagtatgatgctattactaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacttgatttaaaatactaaaaagttatagtaataaagcagtatgatgctattactaaaa 564

                                                                       
Query: 365 tagagaattatcacagaatagagaactcagaattaaattcaagcttacaaacagttggga 424
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 tagagaattatcacagaatagagaacttagaattaaattcaagcttacaaacagttggga 624

                                                                       
Query: 425 acattctgataacaacataaaattttagttagactgaaagtataaactcaagtgatctat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acattctgataacaacataaaattttagttagactgaaagtataaactcaagtgatctat 684

                                                                       
Query: 485 tataaaagacagtgactgcagctgatattttattgtcttcttgaaaatcattaagagaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tataaaagacagtgactgcagctgatattttattgtcttcttgaaaatcattaagagaat 744

                                                                       
Query: 545 agatttcaagtgtgtctcataactttactagataatataaatattaatgaggtcaatata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agatttcaagtgtgtctcataactttactagataatataaatattaatgaggtcaatata 804

                                                                       
Query: 605 gctattcttcaactgggcacatattttgaagcatgttattttaagcaagagatgagcaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gctattcttcaactgggcacatattttgaagcatgttattttaagcaagagatgagcaaa 864

                            
Query: 665 tgtttaacaattaatat 681
           |||||||||||||||||
Sbjct: 865 tgtttaacaattaatat 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)