Query= MSMg01no323_c06.b1 MSMg01no323_c06.b1 CHROMAT_FILE:
MSMg01no323_c06.b1 PHD_FILE: MSMg01no323_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:21 2005
(852 letters)
>mm_chrX_89934417_89935668
Length = 1252
Score = 1632 bits (844), Expect = 0.0
Identities = 847/848 (99%), Gaps = 1/848 (0%)
Strand = Plus / Plus
Query: 5 gaattcatattatatttgaagctcttcagagactttaaataaaggaacattggcaagcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatattatatttgaagctcttcagagactttaaataaaggaacattggcaagcat 264
Query: 65 atgatgatgtaaacagatcatttgtttatacagaaaatatatagagtacaaaaatataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatgatgtaaacagatcatttgtttatacagaaaatatatagagtacaaaaatataca 324
Query: 125 caaattttagtccatataactaattcaaccaaatgcctaaagcaggcagcttagatttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaattttagtccatataactaattcaaccaaatgcctaaagcaggcagcttagatttga 384
Query: 185 gaacaacttcctgtgtgccactccatagatcacaagggttgatttggtaaatctgttttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaacaacttcctgtgtgccactccatagatcacaagggttgatttggtaaatctgttttg 444
Query: 245 caagtgtttccttctttcataagtatttctccagaagctatgtaattcgtcaggggaggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagtgtttccttctttcataagtatttctccagaagctatgtaattcgtcaggggaggg 504
Query: 305 acacacatttctcagcaaaagaacaaaagtaaccaagctttggggcttatccatttttca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acacacatttctcagcaaaagaacaaaagtaaccaagctttggggcttatccatttttca 564
Query: 365 tgatgccctcaaaatttctttgcaatctaccagtttttcaaaccccaccaccagaaaact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatgccctcaaaatttctttgcaatctaccagtttttcaaaccccaccaccagaaaact 624
Query: 425 tattgttactatctcgacattattgattaaaagtaattgcaatgatttatatcagtaact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattgttactatctcgacattattgattaaaagtaattgcaatgatttatatcagtaact 684
Query: 485 gcattgagttgactattcttctaatttcatattacttttttactttaaaataaaacataa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcattgagttgactattcttctaatttcatattacttttttactttaaaataaaacataa 744
Query: 545 caattagaacactgtaaatatttgacagtagtcactatttcagtcatttcccttctaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caattagaacactgtaaatatttgacagtagtcactatttcagtcatttcccttctaaga 804
Query: 605 gaacttttttattgcaaatgatgaccatgcatctcattatataatatcactggtataaat 664
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaacttttt-attgcaaatgatgaccatgcatctcattatataatatcactggtataaat 863
Query: 665 aattcctgccaaaattatctttgaaaccttcagtttacaatgactctactatacaaaatc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aattcctgccaaaattatctttgaaaccttcagtttacaatgactctactatacaaaatc 923
Query: 725 aaattttagaaagcaaataatactttagtttcataatcagaaaatgtatttcttgggttt 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aaattttagaaagcaaataatactttagtttcataatcagaaaatgtatttcttgggttt 983
Query: 785 tggaacacatgctattaactttaataaactgctacataatttattgtcctaaaatgccaa 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 tggaacacatgctattaactttaataaactgctacataatttattgtcctaaaatgccaa 1043
Query: 845 tataacgt 852
||||||||
Sbjct: 1044 tataacgt 1051
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 852
Length of database: 1252
Length adjustment: 10
Effective length of query: 842
Effective length of database: 1242
Effective search space: 1045764
Effective search space used: 1045764
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no323_c06.g1 MSMg01no323_c06.g1 CHROMAT_FILE:
MSMg01no323_c06.g1 PHD_FILE: MSMg01no323_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:22 2005
(752 letters)
>mm_chrX_89966391_89967542
Length = 1152
Score = 1373 bits (710), Expect = 0.0
Identities = 722/726 (99%)
Strand = Plus / Minus
Query: 1 cctcttggacttccctggtttttgccctggctcttaaacctgttttagacctacttgccc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 726 cctcttggacttccctggtttttgccctggctcagaaacctgttttagacctacttgccc 667
Query: 61 aagtatttacagagcgtacaattaaaccctctttacaagtttgtaaaaagctttcataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagtatttacagagcgtacaattaaaccctctttacaagtttgtaaaaagctttcataga 607
Query: 121 ggaaatgggatgtagcagctaagtctattctgtttccagtttctcatacagagctatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaaatgggatgtagcagctaagtctattctgtttccagtttctcatacagagctatagg 547
Query: 181 gaattttctggtatgttttgaataacctttgtgaattatggatagacagtgaaactaaag 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 546 gaattttctggtatgttttgaataacctttgtgaattatgtatagacagtgaaactaaag 487
Query: 241 ttttcttaaaatgaagccctattttatcaaactttatgaaatgcctacaaactgctattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttttcttaaaatgaagccctattttatcaaactttatgaaatgcctacaaactgctattt 427
Query: 301 tattgttgtaaatgaaataggaataggtacattttaaaatatgatggaaagaaaatacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tattgttgtaaatgaaataggaataggtacattttaaaatatgatggaaagaaaatacct 367
Query: 361 caagtatatttcagtgaacagaactgaatttcctcaggcaagcatattttataaagctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caagtatatttcagtgaacagaactgaatttcctcaggcaagcatattttataaagctag 307
Query: 421 gtaatgctattcactgtatccaaacaaaagcaaagtatacacatttatatcaacacaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtaatgctattcactgtatccaaacaaaagcaaagtatacacatttatatcaacacaaca 247
Query: 481 ttttagttcacctaagaataaaccacaatgaggtcatcaatcatgcattttaatatttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttttagttcacctaagaataaaccacaatgaggtcatcaatcatgcattttaatatttta 187
Query: 541 ttttgtattaatatttttatcagtacaaaatctcagataattataactctgtaaaatata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttttgtattaatatttttatcagtacaaaatctcagataattataactctgtaaaatata 127
Query: 601 atctctttgaacttcacagtatgccatgtagtacagaaaaatatcagagcctttaaatgt 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 126 atctctttgaacttcacagtatgccatgtagtacaggaaaatatcagagcctttaaatgt 67
Query: 661 taccttatatgattgtaggttttttaaatgttttaagttgcattctatttatgtattatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 taccttatatgattgtaggttttttaaatgttttaagttgcattctatttatgtattatc 7
Query: 721 acatca 726
||||||
Sbjct: 6 acatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1152
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1142
Effective search space: 847364
Effective search space used: 847364
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
