Query= MSMg01no323_j13.b1 MSMg01no323_j13.b1 CHROMAT_FILE:
MSMg01no323_j13.b1 PHD_FILE: MSMg01no323_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:19 2005
(670 letters)
>mm_chrX_88240768_88241833
Length = 1066
Score = 926 bits (479), Expect = 0.0
Identities = 547/597 (91%), Gaps = 45/597 (7%)
Strand = Plus / Minus
Query: 117 gtagtgagtcatttaattgttattattctctaaattgttaattaaaaactggaatgctca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gtagtgagtcatttaattgttattattctctaaattgttaattaaaaactggaatgctca 1007
Query: 177 tctaattatatgtgactattttataaatatgttcttccatatgttaacaactaaaataac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tctaattatatgtgactattttataaatatgttcttccatatgttaacaactaaaataac 947
Query: 237 atgatctctgtatttaaacttatttaaatttgtatatttttctcttg------------- 283
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 atgatctctgtatttaaacttatttaaatttgtatatttttctcttgtaaaacacagtaa 887
Query: 284 ------------------tatta----------g---gacacagtaaaacatttattttc 312
||||| | ||||||||||||||||||||||
Sbjct: 886 aacatttatttttacatttattatttttctcttgtaaaacacagtaaaacatttattttc 827
Query: 313 atttgtttattggaaaaatagcaaagaattattttattttcaagatgatgatacatatgt 372
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 atttgtttaaaggaaaaatagcaaagaattattttattttcaagatgatgatacatatgt 767
Query: 373 aacctacactgccatttaacttatattttatctaacacaaaaacaaaataaaatttttca 432
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aacctacactgcaatttaacttatattttatctaacacaaaaacaaaataaaatttttc- 708
Query: 433 aaaaatatcatttcaaatttccatagttttcaaatttccacagtcagcatattatttcaa 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaaaatatcatttcaaatttccatagttttcaaatttccacagtcagcatattatttcaa 648
Query: 493 atttcatggcagattttaggttatattgacttccctcttagttatagttcctaatttagc 552
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 647 atttcatggcagattttaggttatattgacttccctctgagttatagttcctaatttagc 588
Query: 553 atccaagctgtgtcattatacttaacattaaaatattgctctaatctaaaaacaatcact 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atccaagctgtgtcattatacttaacattaaaatattgctctaatctaaaaacaatcact 528
Query: 613 agggaatttaatacactctatatcttgttccaaaggatgagaacttcttattattca 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agggaatttaatacactctatatcttgttccaaaggatgagaacttcttattattca 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1066
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1056
Effective search space: 696960
Effective search space used: 696960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_j13.g1 MSMg01no323_j13.g1 CHROMAT_FILE:
MSMg01no323_j13.g1 PHD_FILE: MSMg01no323_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:19 2005
(666 letters)
>mm_chrX_88068473_88069538
Length = 1066
Score = 1257 bits (650), Expect = 0.0
Identities = 662/666 (99%)
Strand = Plus / Plus
Query: 1 taaagttttggtgcctattaaagagtgtaggccccagggatagggaagacctggtgggga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 taaagttttggtgcctattaaagagtgtaggccccagggatagggaagaccttgtgggga 260
Query: 61 gaaggaccttctcagaggtgggggacggagtaggatgaggaactgtgggagaggagacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggaccttctcagaggtgggggacggagtaggatgaggaactgtgggagaggagacca 320
Query: 121 gggggttagacaatggctggactgtaaataattgaaataattaaaaaagataaaagagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggttagacaatggctggactgtaaataattgaaataattaaaaaagataaaagagtg 380
Query: 181 atataattatccctggtcatttgaacaaatgacaaccattatgaaaaggttaaatatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atataattatccctggtcatttgaacaaatgacaaccattatgaaaaggttaaatatgga 440
Query: 241 ccaattattaacaaaatttttatgtatttgatcacattattttctcatttaaatgctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaattattaacaaaatttttatgtatttgatcacattattttctcatttaaatgctttt 500
Query: 301 cttttggcattctagatatgacacatgtatttgtgtgcatgtgtgtatatctgcatattt 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttggtattctagatatgacacatgtatttgtgtgcatgtgtgtatatctgcatattt 560
Query: 361 tgattacaaaattagatgtaaatcttctcagcttcaacagtgcatcacacaaatatgagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgattacaaaattagatgtaaatcttctcagcttcaacagtgcatcacacaaatatgagc 620
Query: 421 tgaataattgtaagacatgcatttgcttcagatcaatactactgaaaatgttcataagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaataattgtaagacatgcatttgcttcagatcaatactactgaaaatgttcataagaa 680
Query: 481 aacatagaaatatgactttagatgatatagctaagaaggatttttcattattacttttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacatagaaatatgactttagatgatatagctaagaaggatttttcattattacttttta 740
Query: 541 aatatatgtgttatttaatctacttgtctgtattttgaaagtttctcaattcctcacaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatatatgtgttatttaatctacttgtctgtattttgaaagtttctcaattcctcacaat 800
Query: 601 acatgtgcaaataaaataagatattttgtgtttgacctgttctaggttgaatagtgtata 660
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 801 acatgtgcaaataaaataagataatttgtgcttgacctgttctaggttgaatagtgtata 860
Query: 661 tttcag 666
||||||
Sbjct: 861 tttcag 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
