BAC Information

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BAC

Clone NameMSMg01-323N11
ChromosomeX (Build37)
Map Location 121,321,979 - 121,322,689
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323N11.T7 (MSMg01no323_n11.b1)MSMg01-323N11.TJ (MSMg01no323_n11.g1)
ACCAG442150AG442151
length1,2651,278
length of high quality
(start - end)		728 (42 - 769)723 (93 - 815)
definitionCHROMAT_FILE: MSMg01no323_n11.b1 PHD_FILE: MSMg01no323_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:51 2005CHROMAT_FILE: MSMg01no323_n11.g1 PHD_FILE: MSMg01no323_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCATTTNNNNNNNNGGCATTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCCTGTATATGTTACTTGACCATTTTACCTTACTGCTT
TTAATATTCTTTCTTTGTTTTCCTCATTTGGTGCTTTGATTAATATATGA
TGGCAGGGATTTTTGTTTTTGTTGTTGTTTTTCTGGTCCAAACTATTTGG
AGTTCTGCATGCTTCTTGTATGTTCATGGACATCTCTTTCATTAGGTTAG
GAAAGGTTTCTTTTATAGTTTTGTTGAAGATATTCACTGGCCCTATAATT
TGGAAATCTTACTTCTCATCTATACCTGTTATCCTTATGTTTTTTCTTCT
CCTTGTGTCCTAGATTTCCTGGATGTACTTAATTTTACTTAATTTTTAAA
ATCTGTTTCAAAAACTCAAAATGGGCAGTTTTTCCAAAGAAATTCAAATT
GATAGTACTTTATTAACTATTACTAATATTGCATACTTTCAAATGTTTAC
ATTTTCTATTGTCAATACAGTAAATAATCCAGCAATTGGTAAAGATGAAA
ATATATCGCCTCAAGTAAAAGGAGATGAAGACATGGGGTAATATTTTCAA
TTCATTTTTCTTTTTTTCTCTTTTTTTTTCTTTCTTTTTTTTTTTTGCCA
GTTCAATAGAGTACTTCAAAAGTAGTGTTTGTGTTACCTTCACTGGAAAA
CTAGATTCAGGAAGATCAGCATTTCAATGTCAGATGCTGATATATGTTAA
GTTCAAGCCCAGCTTGGGATCCTTTATACTTTGNGACCACAAACACATAG
GAACTCATACAATAGGACCACCTGCATGTGATCTTTGACACACTCCAAGA
AAAGCACAAACATCATAAAAATAAGTAGCGGACTATCCTGGGGAAAAAAG
GGTCTTGGCAATTGTGGGAGAATTATGAATCAACCCCTTGTGGGGTGTAA
ACGTATGAATGGTAAAAGTAATTAATCCAGTTCAAGTTGGTAGCCCCCAT
TATTTTTATTAGCTATTGAATTGTTTCCAACCCACCTTTTTTTTTTTTTC
TAAAAATTTAAAAAGTTCTTTTGAAAATTTTTTGGGGGCAAAAAAAAAGG
GTCTACCCCCCCAATAATTTCTGGGTTAATTTTATCAGCGGGTTTTCATC
ACTCAAATTCCATATTTTGTTAAATCTTTGCGATTGTTTATAAAAATTCT
CTGTTTTGTCTACATNCTTGGAAAAAGTCTTTTTACGTTATTCTCGGATT
ATGTGTTCTACTTCT

NNNNCTGTTCNNNNNNNTTGATGGCAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATGGCACGAGGAGGTG
GGACTTGATGCATTAGGGACTCTTAAGACATCACTGACATTACCGTTAGG
CGAAGAAGGTTTGGAGCCCTCTTTGTCTGATGGGGCCTGTTGCTTGACAA
GAGAGTTCTTCTCCAAAATGCTTTGGAGGAGAATTGGAAAGAATACAGTT
ATGTAGGGTAGGGAACAAACTTTTGAACTCCTTCTGGAAGAGGAGGCATT
TATGAATTTCTTTTAAGCACACGTGGGAAGTCTATGGGATGCCTGGGCAG
ATGTGCAATGTCCCATAGAGTCTTGGAAACTTTGCGTTAGTTCTCAAAAC
TTTTTGGTGCATAAGGACCTGCCCTGAGAATTTGAAGATCCCAGATCTCC
TTGGTTAGATTGGGAAGGGTGTAGGGAACCTTGAATGTGTGGGTAAATTA
CCTGTCCATGTTGTCCAGCAGACGATGGCCCAGGCAGTGTGCTATCTTCT
TTGAATTTGTGACTGGTATCTCCAGCCCTGTGTTTGGAAGATGCTGCAGG
CACTCTGGCACCCGACTGGTCAAAATCCCTAGGTTCTTCAAACCCAGTGG
ACATAGGCTGGCTTCTTTTCACCTATCTATGCATGGACACAGCAGATGAG
GCCACTCATTTTCTGGTGGAAGGTGGTAAAACAGATTGTCTGGTACCCTG
CTCAGTGGGTTACTCATGAACTCAGGAAACATCAGAGAAAGTGTAACTGA
TCTTTTTTTTTTTGTTGGTCTCTTTTAGCTCCTTCAGAGGGCCCAGGGTC
GTGTAAATGGCTAAACGCTTTATAAGAGCTTTGGGTTTCTGTAGCTCGTC
TGCAACATGAGCATCAGATTTTTTTGAATCTGTGGTCTTCATAGGGCCTT
AGGCACCTGAACTTGTGCCGTTTCGTATAAGGAGCCTGGAAGGCCCAAGC
CCTTCGGGTCCCTGCGGGGCCAAGGCTTCCCCGGTTGGTTTAAGGGGTAA
AAACCCCTGGGGGTCAGGAGAAGGGCCCCCGCCTTTCCCCCCAGTGGGGA
GAGACCCCTTCTTTTTGGGCCACTGGGGCGCCCCCCCTTCTTACAAGGAA
ACCTGGGGTTGGGGTTAAAGAAAACCTGTGCGGGAGCCCGGCCTCTCCCC
CCGGTTGGGGTTTTCTTNAAAAAGTGTTAAAATGATAGGGGGGTGCCCCT
TGCTCGGAAGTCTCCTTCGTGATTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_n11.g1 MSMg01no323_n11.g1 CHROMAT_FILE:
MSMg01no323_n11.g1 PHD_FILE: MSMg01no323_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:51 2005
         (723 letters)



>mm_chrX_121321771_121322895
          Length = 1125

 Score =  528 bits (273), Expect = e-154
 Identities = 587/727 (80%), Gaps = 86/727 (11%)
 Strand = Plus / Plus

                                                                       
Query: 60  gaagaaggtttggagccctctttgtctgatggggcctgttg--------cttgacaaga- 110
           |||| ||||||||| ||||| ||||||||||||||||||||        |||||| ||| 
Sbjct: 209 gaaggaggtttggatccctccttgtctgatggggcctgttgtaggtccccttgaccagag 268

                                                                       
Query: 111 gagttcttctccaaaatgctttggaggagaattggaaagaatacagttatgtagggtagg 170
           ||| |||| ||||| ||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct: 269 gag-tcttgtccaacatgctttggtggagaattggaaagattagagttatgtagggtagg 327

                                                                       
Query: 171 g---aacaaacttt-tgaactccttctggaagaggaggcatttatgaattt-cttttaag 225
           |   |||   ||||  ||||||||||||||||||||||||| ||||| ||| ||||| ||
Sbjct: 328 gggtaac---ctttgggaactccttctggaagaggaggcatgtatgagtttcctttt-ag 383

                                                                       
Query: 226 cacacgtgggaagtctatgggatgcctgggcagatgtgcaatgtcccatagagtcttgga 285
           ||||  ||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 384 cacaattggaaagtctttgggatgcctgggcagatgtggaatgtcccatagactcttgga 443

                                                                       
Query: 286 aact-t-tgcgttagttctcaaaactttttgg--tgcataagga-----cctg------- 329
           || | | || ||||||||| | ||| | ||||  || ||| |||     ||||       
Sbjct: 444 aa-tatctg-gttagttct-agaacatcttgggttg-atagggacagtccctgagcatgt 499

                                                                       
Query: 330 ------------------ccctgagaat-ttg-----------aagatcccagatctcct 359
                             ||||||| || |||           |||||||||||||||||
Sbjct: 500 tgggttgatagggagagtccctgagcatcttggggagaagtgaaagatcccagatctcct 559

                                                                       
Query: 360 tggttagattgggaagggtgt-agggaaccttgaatgtgtgggtaaattacctgtccatg 418
           ||| ||||| ||||||||||| | |||||||||||| |||||| ||||||||||||||||
Sbjct: 560 tggctagatcgggaagggtgtga-ggaaccttgaatttgtggggaaattacctgtccatg 618

                                                                       
Query: 419 ttgtccagcagacgatggcccaggcagt--gtgctatcttctttgaa-tttgtgactggt 475
           |||||||||||| ||||||||||||| |  |||  |||||||||||| ||| ||||||| 
Sbjct: 619 ttgtccagcagaagatggcccaggcactttgtg--atcttctttgaacttt-tgactgga 675

                                                                       
Query: 476 atctccagccctgtgtttggaagatgctgcaggcactctggcacccgactggtcaaaatc 535
           ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 676 atctccagccccgtgtttggaagatgttgcaggcactctggcacccaactggtcaaaatc 735

                                                                       
Query: 536 cctaggttcttcaaacccagtggacataggctggcttcttttcacctatct-atgcatgg 594
           | |||||||||||||| |||||||||||| ||||||||||||||||| ||| | | ||||
Sbjct: 736 cataggttcttcaaacacagtggacatagactggcttcttttcacct-tctcagggatgg 794

                                                                       
Query: 595 acacagcagatg-aggccactcattttctggtggaagg-tggtaaaacagattgtctggt 652
            ||||| ||| | |||| |||| ||||||||||| ||| || |||||||||| |||||||
Sbjct: 795 gcacagaagaaggaggctactctttttctggtggcaggctg-taaaacagatggtctggt 853

                                                                       
Query: 653 a-ccctgctcagtgggttactcatgaactcaggaaacatcagagaaagtgtaactgatc- 710
           | ||||| |||||| || |||| ||  ||||| || |||||||| ||||||||||| || 
Sbjct: 854 atccctggtcagtgagtgactcgtgccctcagtaaccatcagaggaagtgtaactg-tcc 912

                  
Query: 711 -tttttt 716
            ||||||
Sbjct: 913 atttttt 919


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1125
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1115
Effective search space:   794995
Effective search space used:   794995
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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