BAC Information

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BAC

Clone NameMSMg01-324N06
ChromosomeX (Build37)
Map Location 64,916,675 - 64,917,048
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666824, LOC627734, EG666828
Downstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194, EG236844, LOC385372, LOC627888, LOC434788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324N06.T7 (MSMg01no324_n06.b1)MSMg01-324N06.TJ (MSMg01no324_n06.g1)
ACCAG442873AG442874
length773766
length of high quality
(start - end)
377 (45 - 421)549 (78 - 626)
definitionCHROMAT_FILE: MSMg01no324_n06.b1 PHD_FILE: MSMg01no324_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:14 2005CHROMAT_FILE: MSMg01no324_n06.g1 PHD_FILE: MSMg01no324_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGG
AATTCAGGCATCCTTACTCTTCTGTTGTCCTTTCTTCCCAATCAGCGATT
TGTGGATGTGTCCAGTGACACCACCACCAGCAATGATAGCCTTTGTCAGA
GAATCCAATTCTCCACTTATAGCAAGTTGCAAGTGAAGAGGGGTAATACA
CTTTACCTTTAAGTCTTTTTGGGGGGGGGATTTTTTTTAATTAGGTATTT
TCCTCATTTACATTTCAAATGCTATCCAAAAAGTCCCCCATACCCTCCCC
CCACCCCCTACCCACCCACTCCCACTTTTTGGCCCTAGTGTTCCCCTGTA
CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATG
ACCTACTAGGCCATCTTTTGACACCTATTGCAGTTAGATACTAGAGCTCC
GGGGTACTGGTTATATCATAATGCTGTTCCTCCTATATGGTTGCAGATCC
CTTTAGCTTCTTGGGTATTTTCTCCTAGCCCTTGTTTGTTGGACCTGCTG
ACCATCCCATAGCTGACTGTGAGTATCCTCTTCTGTGTTTGCTAGGTCCC
AAGTATTCCCACTTAAGACTGCCATATCATGTTCCTATCCCCCACTTTTT
TTCTTATGTCTGCTTTGACGTTCACTTTTTTGCATTCCGATATTTGCTTT
GTTTTCCCCGTTATCAGGTAACCGCTCTTACTGTAACCCTTCTCCTTTGT
AATCTCTCCCCCTACTTTGCCTT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTACAGCTGATAAACAAATTAAC
AAAGTGACTGGATATAAAATTTACTCAGATAAATCACTATCCTTCTTACA
CTCAAAGGATAAACAGCCTGGGAAAGAAATTAGGGAAATGAAGGGTGCTT
CACAATAGTCACAAACAATATAAAATATCTTGGTATGACCCTAACTAAGC
AATCCTTGACCTCAAGCTGTACTATGGAGCAATAGTTATGAAAACTGCAT
GATATTGGTACAGTGACAAGCAGGTAGATAAACGGAATAGTATTGAAGTC
CTAGAAATGATCCCACACACCTATGGTCATTTGATCTTTGACAAAGGAGC
TAAAACCATCCAGTGGAAAAAAAGACAGCATTTTCAGCAAACGGTGCTGT
TTCAACCTGAGGTCAACATGTAGAAGAATGCAAACCAACCAAAAGTTTGG
GAAATGATCTTTACCAACCCTACATCTGATACAGGGCTAATATCCAATAT
ATATAAAGAGCTCAAGAAGGTAGACTCCAGAGAAACAAATAACCCCATTA
TAAATTGGGTACAGAGCTAAACAAAGAATACAGAATGGCTGAGAAAAAAC
TAAAGAAAAAAAGTTCAACATCCTTAGTCATAAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCACATA
CTCAGGTGACAGCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_n06.b1 MSMg01no324_n06.b1 CHROMAT_FILE:
MSMg01no324_n06.b1 PHD_FILE: MSMg01no324_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:14 2005
         (377 letters)



>mm_chrX_64916664_64917440
          Length = 777

 Score =  685 bits (354), Expect = 0.0
 Identities = 369/374 (98%), Gaps = 1/374 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcaggcatccttactcttctgttgtcctttcttcccaatcagcgatttgtggatg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaattcaggcatccttagtcttctgttgtcctttcttcccaatcagcgatttgtggatg 326

                                                                       
Query: 65  tgtccagtgacaccaccaccagcaatgatagcctttgtcagagaatccaattctccactt 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtccggtgacaccaccaccagcaatgatagcctttgtcagagaatccaattctccactt 266

                                                                       
Query: 125 atagcaagttgcaagtgaagaggggtaatacactttacctttaagtctttttgggggggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagcaagttgcaagtgaagaggggtaatacactttacctttaagtctttttgggggggg 206

                                                                       
Query: 185 gattttttttaattaggtattttcctcatttacatttcaaatgctatccaaaaagtcccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gattttttttaattaggtattttcctcatttacatttcaaatgctatccaaaaagtcccc 146

                                                                       
Query: 245 cataccctcccccca-ccccctacccacccactcccactttttggccctagtgttcccct 303
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 145 cataccctccccccacccccctacccacccactcccactttttggccctagcgttcccct 86

                                                                       
Query: 304 gtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatgacctact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  gtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatgacctact 26

                         
Query: 364 aggccatcttttga 377
           ||||||| ||||||
Sbjct: 25  aggccattttttga 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)