BAC Information

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BAC

Clone NameMSMg01-326L14
ChromosomeX (Build37)
Map Location 10,194,649 - 10,338,323
singlet/doubletdoublet
Overlap geneEG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1
Upstream geneLOC100042867, Dynlt3, 1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7
Downstream geneLOC668982, Ppia-psx_105.1, LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326L14.T7 (MSMg01no326_l14.b1)MSMg01-326L14.TJ (MSMg01no326_l14.g1)
ACCAG444269AG444270
length732734
length of high quality
(start - end)		685 (48 - 732)656 (79 - 734)
definitionCHROMAT_FILE: MSMg01no326_l14.b1 PHD_FILE: MSMg01no326_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:28 2005CHROMAT_FILE: MSMg01no326_l14.g1 PHD_FILE: MSMg01no326_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,337,644 - 10,338,323)(10,194,649 - 10,195,304)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCCCCCACGTCTTCTGTATTTAAATACTTTTTGTATTTGTTA
AAGTATTCCCTTAATATAGCATGTATCTTCTTTAGTTTCCCTCTATTTAA
TTTCTGCCTTTCATTTTTGTTTCATCTGACCACCATAGGAAAGGCTGGAG
ACAATGCAACCATTAAAGCAGGATGTTGTCAATGGGCGTCTTTGTGGGCC
TGGAAATGAAACAGGCAGCAGTCAGTACCCTAGTAGGGAATCATATAAAT
TTTCCATTGAGAAAGGGATGCTTATGTGAACAGAAACAATCATCCCTAAA
GGCTCACTCCCAGGGCAGCACCAGAAGAGACCTCAAGAGATTATAATGCA
TAACCGGAGCGAGAAAACCTGATTTGTGGATTCCCATGTTATAAAAACTA
CTTCTGTTGATTTTCGGTAAATGTCATGTGAAATAAATTGCACTATAGCT
TGAAGATTGTTTTGCAAGTAAAAATGTTTAGGGTGGCATTTTCCTTTAGA
GGAATAAATTGATATTGAACTGAAAGGCTTGGACAGTTTTTATTTGCCAC
ATACTTGTTCAGCCCACTGTGCATACATGTTAGCCATGTTTTCCTCTCCA
TGCTAGAACACAATANAATCTATGACATTTGAGCACAAGGGTTACATGTT
ATCATATAGCTGTCGCTTTGCTTCCACATTAA

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCCCAGGACCCGCGTAAA
TCTGGACATGAAAGAGCACACCTACAATCCTAGTACTGCTTCAGTGAGAT
GTTAATTAGGCAGAGACAGGAAAATCCCTGGAAGTTTGCAAGCCAGCTAC
CCTGGTTGTATGCAGAAGCAAACAACATGTGAACTTGTCTCAAACAAGAT
GAAAACTGACTATTGACGCTAGAGTTTGTGCTGTACCACACATACACTCT
GACACATGCATACATATACTCATACACATGAACAAGCACGCACACACACA
TATATCATAGACTTACACGAGGCACACACATGTGCACCTGTGCGTGTGCA
CATTCACTCACACACACATACACTGAAAATAAAACCCAGCAGTCAAGATA
TAATTGATCAATTTCTAGTATACGATAGTATGCTTAAGTATCCATTGGTA
GGAAATAGTTGCCCAAGAGCTTCAGCAGATGCAATGTAAAGATAATCCTG
GCTTACCTTCTGCTCCTCCCACCTCCAATTTTATATTCTTCTTCATCCTG
ATTGTAATAGTACCATCTTTTCAAAACCAGTCCTTGTTGGCTTACTCTTT
TAGCTCCCTGTGCCACTGGAAGACTTTGGATCTGATTGCAGAAATAATAT
GCAAGTGAACCTTACTTTCCAAGGGAGCCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_l14.b1 MSMg01no326_l14.b1 CHROMAT_FILE:
MSMg01no326_l14.b1 PHD_FILE: MSMg01no326_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:28 2005
         (685 letters)



>mm_chrX_10337440_10338524
          Length = 1085

 Score = 1263 bits (653), Expect = 0.0
 Identities = 673/680 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccccccacgtcttctgtatttaaatactttttgtatttgttaaagtattccct 64
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattcagcccccaagtcttctgtatttaaatactttttgtatttgttaaagtattccct 825

                                                                       
Query: 65  taatatagcatgtatcttctttagtttccctctatttaatttctgcctttcatttttgtt 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 824 taatatagcatgtatcttctttagtttccctttatttaatttctgcctttcatttttgtt 765

                                                                       
Query: 125 tcatctgaccaccataggaaaggctggagacaatgcaaccattaaagcaggatgttgtca 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 764 tcatctgaccaccataggaaaggctggagacaatgcaaccattaaggcaggatgttgtca 705

                                                                       
Query: 185 atgggcgtctttgtgggcctggaaatgaaacaggcagcagtcagtaccctagtagggaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atgggcgtctttgtgggcctggaaatgaaacaggcagcagtcagtaccctagtagggaat 645

                                                                       
Query: 245 catataaattttccattgagaaagggatgcttatgtgaacagaaacaatcatccctaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 catataaattttccattgagaaagggatgcttatgtgaacagaaacaatcatccctaaag 585

                                                                       
Query: 305 gctcactcccagggcagcaccagaagagacctcaagagattataatgcataaccggagcg 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 584 gctcactcccagggcagcaccagaagagacctcaagagattacaatgcataaccggagcg 525

                                                                       
Query: 365 agaaaacctgatttgtggattcccatgttataaaaactacttctgttgattttcggtaaa 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agaaaacgtgatttgtggattcccatgttataaaaactacttctgttgattttcggtaaa 465

                                                                       
Query: 425 tgtcatgtgaaataaattgcactatagcttgaagattgttttgcaagtaaaaatgtttag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtcatgtgaaataaattgcactatagcttgaagattgttttgcaagtaaaaatgtttag 405

                                                                       
Query: 485 ggtggcattttcctttagaggaataaattgatattgaactgaaaggcttggacagttttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggtggcattttcctttagaggaataaattgatattgaactgaaaggcttggacagttttt 345

                                                                       
Query: 545 atttgccacatacttgttcagcccactgtgcatacatgttagccatgttttcctctccat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atttgccacatacttgttcagcccactgtgcatacatgttagccatgttttcctctccat 285

                                                                       
Query: 605 gctagaacacaatanaatctatgacatttgagcacaagggttacatgttatcatatagct 664
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gctagaacacaataaaatctatgacatttgagcacaagggttacatgttatcatatagct 225

                               
Query: 665 gtcgctttgcttccacatta 684
           ||||||||||||||||||||
Sbjct: 224 gtcgctttgcttccacatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no326_l14.g1 MSMg01no326_l14.g1 CHROMAT_FILE:
MSMg01no326_l14.g1 PHD_FILE: MSMg01no326_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:29 2005
         (656 letters)



>mm_chrX_10194449_10195504
          Length = 1056

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattcccaggacccgcgtaaatctggacatgaaagagcacacctacaatcctagtactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattcccaggacccgcgtaaatctggacatgaaagagcacacctacaatcctagtactg 260

                                                                       
Query: 61  cttcagtgagatgttaattaggcagagacaggaaaatccctggaagtttgcaagccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcagtgagatgttaattaggcagagacaggaaaatccctggaagtttgcaagccagct 320

                                                                       
Query: 121 accctggttgtatgcagaagcaaacaacatgtgaacttgtctcaaacaagatgaaaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctggttgtatgcagaagcaaacaacatgtgaacttgtctcaaacaagatgaaaactg 380

                                                                       
Query: 181 actattgacgctagagtttgtgctgtaccacacatacactctgacacatgcatacatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actattgacgctagagtttgtgctgtaccacacatacactctgacacatgcatacatata 440

                                                                       
Query: 241 ctcatacacatgaacaagcacgcacacacacatatatcatagacttacacgaggcacaca 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatacacatgaacaagcacacacacacacatatatcatagacttacacgaggcacaca 500

                                                                       
Query: 301 catgtgcacctgtgcgtgtgcacattcactcacacacacatacactgaaaataaaaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtgcacctgtgcgtgtgcacattcactcacacacacatacactgaaaataaaaccca 560

                                                                       
Query: 361 gcagtcaagatataattgatcaatttctagtatacgatagtatgcttaagtatccattgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagtcaagatataattgatcaatttctagtatacgatagtatgcttaagtatccattgg 620

                                                                       
Query: 421 taggaaatagttgcccaagagcttcagcagatgcaatgtaaagataatcctggcttacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggaaatagttgcccaagagcttcagcagatgcaatgtaaagataatcctggcttacct 680

                                                                       
Query: 481 tctgctcctcccacctccaattttatattcttcttcatcctgattgtaatagtaccatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgctcctcccacctccaattttatattcttcttcatcctgattgtaatagtaccatct 740

                                                                       
Query: 541 tttcaaaaccagtccttgttggcttactcttttagctccctgtgccactggaagactttg 600
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttcaaaactagtccttgttggcttactcttttagctccctgtgccactggaagactttg 800

                                                                   
Query: 601 gatctgattgcagaaataatatgcaagtgaaccttactttccaagggagcccattg 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatctgattgcagaaataatatgcaagtgaaccttactttccaagggagcccattg 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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