BAC Information

Click to search

BAC

Clone NameMSMg01-327F03
ChromosomeX (Build37)
Map Location 68,213,137 - 68,374,956
singlet/doubletdoublet
Overlap genePpia-psx_466.1, EG628080, G630014P10Rik
Upstream geneIds, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993
Downstream geneLOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327F03.T7 (MSMg01no327_f03.b1)MSMg01-327F03.TJ (MSMg01no327_f03.g1)
ACCAG444711AG444712
length734739
length of high quality
(start - end)
369 (45 - 413)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no327_f03.b1 PHD_FILE: MSMg01no327_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:12 2005CHROMAT_FILE: MSMg01no327_f03.g1 PHD_FILE: MSMg01no327_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,213,137 - 68,213,500)(68,374,661 - 68,374,956)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTGCAAGGTTTCCAAAATCTTCTAGATATGATAAGAATACTGTAT
CTATGAAATCTTAACATAGTTCTATATGACAAGTAGCTCAAACAAGTCCT
ATATGACAATACCCCAGTGTTTATGGGTGAAATCTCACAAGGTCCCACTC
CTAGATGTAGGCTTAGATTTTTTTAAACCTACTTTAAATAAAGTTCTCAA
ATGCTTTGTCTCCCCTTGCTAGCCCACATCCAAAGGTAGGGGAGAAAAGA
TGGTAAATAGGACAAGGGGATGTGGACCTATTTAGAAGTAGTTCTTGGAG
GTGATTCCAATCTCCTTTTGTCAGGATATGAGCACTCCAGTTCAGTAGTG
TCAGGATACCAAACATGATTCCCCACCACCAGCTTGATCCAGCAGAAACC
ATTCAGGCCTCCATGTAATATGCTCTTGCCAGCAGGAGCAACCAGAACCA
TCAGGAGAAGCTCTCTGCCGTGTCTCTCTCATTGAACCATATATCAGTTT
AGCACAGATGCGAACCCATAATACATTGCATTGCTATTACAGGGCTCCAT
CCCCTGTTCTTGACTCCTATTTTATACTCCCTTCCAACATTCCGTGTCCC
TCCCACTCACCCGGTCTTTGCCCTGTATCTATAGAACTTCTCGAGTCTTG
TCTCATTTTAATTGACATTGTGCAATCCTGCTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGTCTGGCCTATGGATCTATATG
TGGCTGGGAAGACATCTCATAGTAGAATGTTGTTGTCCCCATGGGGAGCC
TAGCCTATGAGGGGGTATTAGGGGGCTTTTATGCACTTCTAATCTTTGGA
GGGCATGCTTGCTTGGTTTTTCCTCCAAAACACCTTCCCCCAATCCCACC
TTAGTGATCAGCCAGCTGTAATTTTCATGACCTCTATCGTTAAGCATTTC
CCCTAAGGCATCTGAGCTGGCTCTGTGGCTATACAGTCAGACTACTAACA
CATCCCATTGCAGATAAGAACAAAACAAAGTGGCTCACAAGGTTAGATGG
TGGCACATGTCCATGAGTGCCACCGAGAGAGTTCCACTGCTGATGCTGGT
GCTCCAGCCAGAGAGCCGCAGAAGTCCACGCATAGCGATGTCATCAGTCC
TATAATGACATCAAACTACAGTGCTTTTGAGCCCCGGATTCGGGTTTCCG
CCCCCCATTCGACTGTCCTGTTCCTGCCTATTGTCTCTGACTTCATGCCA
CTCTCTCTTTCTTATGTCTCCTGTCTCCTCTTAAGGGCTGTTTTTTTCCG
CTGCATGTACCTCGTCTTCTTTATTTAACCCCCTCGATGACCTATGCCTT
TGGATTGATTGGTCCCCCCGCTGCTCCCTTGGTTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_f03.b1 MSMg01no327_f03.b1 CHROMAT_FILE:
MSMg01no327_f03.b1 PHD_FILE: MSMg01no327_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:12 2005
         (369 letters)



>mm_chrX_68212932_68213700
          Length = 769

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctgcaaggtttccaaaatcttctagatatgataagaatactgtatctatgaaat 65
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctgcaaggggtctaaaatcttctagatatgataagaatactgtatctatgaaat 265

                                                                       
Query: 66  cttaacatagttctatatgacaagtagctcaaacaagtcctatatgacaataccccagtg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttaacatagttctatatgacaagtagctcaaacaagtcctatatgacaataccccagtg 325

                                                                       
Query: 126 tttatgggtgaaatctcacaaggtcccactcctagatgtaggcttagatttttttaaacc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttatgggtgaaatctcacaaggtcccactcctagatgtaggcttagatttttttaaacc 385

                                                                       
Query: 186 tactttaaataaagttctcaaatgctttgtctccccttgctagcccacatccaaaggtag 245
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tactttaaataacgttctcaaatgctttgtctccccttgctagcccacatccaaaggtag 445

                                                                       
Query: 246 gggagaaaagatggtaaataggacaaggggatgtggacctatttagaagtagttcttgga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gggagaaaagatggtaaataggacaaggggatgtggacctatttagaagtagttcttgga 505

                                                                       
Query: 306 ggtgattccaatctccttttgtcaggatatgagcactccagttcagtagtgtcaggatac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggtgattccaatctccttttgtcaggatatgagcactccagttcagtagtgtcaggatac 565

               
Query: 366 caaa 369
           ||||
Sbjct: 566 caaa 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no327_f03.g1 MSMg01no327_f03.g1 CHROMAT_FILE:
MSMg01no327_f03.g1 PHD_FILE: MSMg01no327_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:12 2005
         (296 letters)



>mm_chrX_68374461_68375156
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtctggcctatggatctatatgtggctgggaagacatctcatagtagaatgttgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 catgtctggcctatggatctatatgtggctgggaagacatctcatagtagaatgttgttg 437

                                                                       
Query: 61  tccccatggggagcctagcctatgagggggtattagggggcttttatgcacttctaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tccccatggggagcctagcctatgagggggtattagggggcttttatgcacttctaatct 377

                                                                       
Query: 121 ttggagggcatgcttgcttggtttttcctccaaaacaccttcccccaatcccaccttagt 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 376 ttggagggcatgcttgcttggtttttcctctaaaacaccttcccccaatcccaccttagt 317

                                                                       
Query: 181 gatcagccagctgtaattttcatgacctctatcgttaagcatttcccctaaggcatctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatcagccagctgtaattttcatgacctctatcgttaagcatttcccctaaggcatctga 257

                                                                   
Query: 241 gctggctctgtggctatacagtcagactactaacacatcccattgcagataagaac 296
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 256 gctggctctgtggcaatacagtcagactacaaacacatcccattgcagataagaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)