BAC Information

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BAC

Clone NameMSMg01-328B15
ChromosomeX (Build37)
Map Location 43,543,562 - 43,544,087
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040038, EG385346, LOC100040075
Downstream geneActrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328B15.T7 (MSMg01no328_b15.b1)MSMg01-328B15.TJ (MSMg01no328_b15.g1)
ACCAG445287AG445288
length801733
length of high quality
(start - end)
277 (40 - 316)525 (69 - 593)
definitionCHROMAT_FILE: MSMg01no328_b15.b1 PHD_FILE: MSMg01no328_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:09 2005CHROMAT_FILE: MSMg01no328_b15.g1 PHD_FILE: MSMg01no328_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATTCCTGAGCCCAATTTTTTAATGGGGTTATTTGATTTTCTGGA
GTACACCTTCTTGTGTTCTTTATATATATTGGATATTAGTCCACTATTTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACAGTGTCTTTTGCCTTACAGAAACTTTGCAGTTTCATGAGGTC
CCATTTGTCAATTCTCGATCTGACAGTACAAGCCATTGCTGTTCTATTCA
GGAATTTTTTCCCCTGTGTTTAATGTCTTTGACGCTTTTCCACACTTTCT
CCTCTATATATTTCCGTGTCTCTGCTTCTGTTTGCAGTTCTTTGATTCAT
TTATATTCGACCCACCTCCCCCCGAAGATAATAATGTCCCATATCACACC
TCTTCTTCTTTTTAATCCCCAGTTTGTGCTCATTTACTTCTTGTTTGAAC
ATGTTTGTCTATCTTTTTACATTCGTAAATCCTTATCAATATACCATTGT
CTCTTAATTTATATTTATCTTATAATGACTGCCCTTCTTATTTATCTTCA
TTCCCCTTATTTACTCTTTACCCCCTCCTTTTTTCCTCTCGCTTTCTTAA
CCCATATTCCCATTCTTTATTGTACTATTCTCCTCTTTCTCCCATATTTC
TCCCCTTTCTTTCCCCTCTCTCTTTTTCTCTTCTACTTCCCCCCCCCTCT
CCTTTTCGCTTCACGCCGTCTCTCTTTTGTACTCTTTCTTTCTTATTCTT
C
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATAATTACAATCATTAATTACAGGCCGCTGA
GGATTAATTTTTATTGACAATAGTTCTTAGCATTTGACATGCTTTTATAC
AAAAAAAATCCTACTTTTCTGAGACAGATGCTATGATAATTCACTCTATC
AATGATCAAATGCTTTAAAAACCATAAGACGAATAATACTTATTGTTGAA
AAGTACAGTTCTGTTGGTGAAGAAAAGAATGAGAGGCAGTTACATTGTCT
TGTACATAATTTATTTAGCTTGTACCCTCTTCTCTATTTTCAGATACATT
AAATACTTTTTGTTGAAAATCACAAGATATTCTTTGAAAATCCTGAAAGC
GTTATATTTAAAACCCACGCTACTGAATTTCATTATAATATATGTATTAT
CAAAAGAAAGGCCATTCAGAGACTGCCTCACCTGGGGATCCATCCCATAT
ACAGTCAACAAACCCAGACACTGTGGCTGATGCAAAGAAGTGCTTGCTGA
CAGAAGCCCAGTATGGCTATCTCCTGAGAGGTTCTGCTAGTGTCTGACAA
AAACAGAGGTGGATGCTCTCAGCCAACCATTGGACTGAGCACAAGATCCC
CATTTGAGGAGCTAGAGTAAGGACCCCAGTGAGCTGAAGGTTTTTGCAGC
CCCCTACGATGAAAAGCAATATGAACTAACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_b15.g1 MSMg01no328_b15.g1 CHROMAT_FILE:
MSMg01no328_b15.g1 PHD_FILE: MSMg01no328_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:09 2005
         (525 letters)



>mm_chrX_43543362_43544287
          Length = 926

 Score =  940 bits (486), Expect = 0.0
 Identities = 516/526 (98%), Gaps = 1/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataattacaatcattaattacaggccgctgaggattaatttttattgacaatagttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataattacaatcattaattacaggccgctgaggattaatttttattgacaatagttctt 260

                                                                       
Query: 61  agcatttgacatgcttttatac-aaaaaaaatcctacttttctgagacagatgctatgat 119
           |||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||
Sbjct: 261 agcatttgacatgcttttatacaaaaaaaaatcctatttttctgagacaaatgctatgat 320

                                                                       
Query: 120 aattcactctatcaatgatcaaatgctttaaaaaccataagacgaataatacttattgtt 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aattcactctatcaatgatcaaatgctttaaaaaccataagactaataatacttattgtt 380

                                                                       
Query: 180 gaaaagtacagttctgttggtgaagaaaagaatgagaggcagttacattgtcttgtacat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaagtacagttctgttggtgaagaaaagaatgagaggcagttacattgtcttgtacat 440

                                                                       
Query: 240 aatttatttagcttgtaccctcttctctattttcagatacattaaatactttttgttgaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttatttagcttgtaccctcttctctattttcagatacattaaatactttttgttgaa 500

                                                                       
Query: 300 aatcacaagatattctttgaaaatcctgaaagcgttatatttaaaacccacgctactgaa 359
           || |||||||||||||||||||||||||||||| ||||||||||||   | |||||||||
Sbjct: 501 aaccacaagatattctttgaaaatcctgaaagcattatatttaaaattgaggctactgaa 560

                                                                       
Query: 360 tttcattataatatatgtattatcaaaagaaaggccattcagagactgcctcacctgggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcattataatatatgtattatcaaaagaaaggccattcagagactgcctcacctgggg 620

                                                                       
Query: 420 atccatcccatatacagtcaacaaacccagacactgtggctgatgcaaagaagtgcttgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atccatcccatatacagtcaacaaacccagacactgtggctgatgcaaagaagtgcttgc 680

                                                         
Query: 480 tgacagaagcccagtatggctatctcctgagaggttctgctagtgt 525
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacagaagcccagtatggctatctcctgagaggttctgctagtgt 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 926
Length adjustment: 10
Effective length of query: 515
Effective length of database: 916
Effective search space:   471740
Effective search space used:   471740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)