TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCCAGAAACCATGCCAGACTTGTTATAGAGGCAGCTAGACCTTTGGAG
CCCTGGCAAATCTCCTCATAAGATAAACATGAACTCCAGAGATGCTGGAT
AAAGAGATGGATGGGGAAAGAATGAAATCACGAGTTGCCTTTACTTTGTG
AAAAAGTAGGTCCCAAATCAAGTAGGGTGATCAGAGAAGTCATTTTTACT
GTTCATTCATTTTCACTTGGCACTTATTGGGCAAGATCTTCCTGAATCTT
TTGTGACTTTGCCTACATTCAAAGCTTACATGTCATTCTTATCAAAGCCC
TTGCCCCTATTACACCATGCCCTCACTCTATCTTACTAACTCCCTGCATC
CCTATCTACTCCTTTTTTTTGTCCCCCCCTTTTATCCCGAATATATTTCA
CCTTATTTACTCCCTCCCTTATCCCCCCATTTTCTTTTCTTCATCCCCTT
CTCCCCTCTTATTTTTTTTTTTCCCCCCCTCCCATAACGCACTTTCTCTT
ACTTTCCCCCCTTTTCCTCCATTTTTTTTTTTATTTTCTTCCCTACTTCC
CCCCTCTTTTTTTTTTTTTCCCCTCCTTGTTCTCTCTTTTCTCCCCCCCT
TTCCTTTCCCTTTTTCCCCTCCTTATTTCTCCTTTCCTCCCCCCTTTTCC
CCACTCCCTTCCCCCTTTCTCTCCCGTTTTTTTCTTTCCCCTTTCCCCAC
TTTCTTTTTCTATATCCTTTTTCCAACCTTCGCCTGTCCACCTCCCCTCT
CCTCCTTTCCCCCCCCCCTCTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAGCCCATTCAGTGGCATATTT
AATTAAGCAACCTATCTGCTGAATGCACTGGGGGTTGTCTGACAGTGCTA
TTCACTCCTGATTTGGATGACAAAGGATATGGTGAGATATTCAGCAGTCT
GGTGGAAAGGAAAGAAACTCCCAATTGGTCACACCTACCTATTTCTCTTG
GCATGTTGCATTTGCTATGATAATACAGAAAATAGACCTTTTATGTATTG
AGGAAGTCAGTGGACATCAACCTCTTGCTTTTTGCTCTTCCACAGCAAGC
CTTGTCTGAGTTTTGTACACAATTCCATTAGAGATGAATAGACATTTAGC
CATAGGTGGGGAATTTTAGCTTGCAAGAAAAGTCAGGTGCTCATTTTAAT
GCTGCTATAGAATAGGTACTATTGCCAATCCTTAATGGATACTATTAGTA
GTATGGATAGTTATATGGTGTTTACTTGATTCCAGACACATGTCAAAGCA
TTACATTCTTTATCCTTTGAGGCAAACCTATGGTAGAGATGCAGTTATTA
TCTATTAATTCAGATGCAAAAATAGAGACTATAAGTAACTTGTATGAGAA
CACACAGCAGGAAATGACTAAATCAAACTTGGAATGCTTGAAGGGATTAT
CATCCTATTACAACCATTAATGCTTGCGAGTGCGATGTACCCTTGTAACT
TCAGGGTACT

Query= MSMg01no329_a24.b1 MSMg01no329_a24.b1 CHROMAT_FILE:
MSMg01no329_a24.b1 PHD_FILE: MSMg01no329_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:23 2005
         (268 letters)



>mm_chrX_48736226_48736893
          Length = 668

 Score =  464 bits (240), Expect = e-135
 Identities = 258/264 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattccagaaaccatgccagacttgttatagaggcagctagacctttggagccctggc 64
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccagaaaccaggctagacttgttatagaggcagctagacctttggagccctggc 264

                                                                       
Query: 65  aaatctcctcataagataaacatgaactccagagatgctggataaagagatggatgggga 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatctcctcataagataaacatgacctccagagatgctggataaagagatggatgggga 324

                                                                       
Query: 125 aagaatgaaatcacgagttgcctttactttgtgaaaaagtaggtcccaaatcaagtaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaatgaaatcacgagttgcctttactttgtgaaaaagtaggtcccaaatcaagtaggg 384

                                                                       
Query: 185 tgatcagagaagtcatttttactgttcattcattttcacttggcacttattgggcaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 385 tgatcagagaagtcatttttactgttcattcattttcacttggcacttagtgggtaagat 444

                                   
Query: 245 cttcctgaatcttttgtgactttg 268
           |||||||||||||||||| |||||
Sbjct: 445 cttcctgaatcttttgtgtctttg 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no329_a24.g1 MSMg01no329_a24.g1 CHROMAT_FILE:
MSMg01no329_a24.g1 PHD_FILE: MSMg01no329_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:23 2005
         (542 letters)



>mm_chrX_48911938_48912879
          Length = 942

 Score = 1040 bits (538), Expect = 0.0
 Identities = 541/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagcccattcagtggcatatttaattaagcaacctatctgctgaatgcactgggggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tatagcccattcagtggcatatttaattaagcaacctatctgctgaatgcactgggggtt 683

                                                                       
Query: 61  gtctgacagtgctattcactcctgatttggatgacaaaggatatggtgagatattcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtctgacagtgctattcactcctgatttggatgacaaaggatatggtgagatattcagca 623

                                                                       
Query: 121 gtctggtggaaaggaaagaaactcccaattggtcacacctacctatttctcttggcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtctggtggaaaggaaagaaactcccaattggtcacacctacctatttctcttggcatgt 563

                                                                       
Query: 181 tgcatttgctatgataatacagaaaatagaccttttatgtattgaggaagtcagtggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgcatttgctatgataatacagaaaatagaccttttatgtattgaggaagtcagtggaca 503

                                                                       
Query: 241 tcaacctcttgctttttgctcttccacagcaagccttgtctgagttttgtacacaattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcaacctcttgctttttgctcttccacagcaagccttgtctgagttttgtacacaattcc 443

                                                                       
Query: 301 attagagatgaatagacatttagccataggtggggaattttagcttgcaagaaaagtcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 attagagatgaatagacatttagccataggtggggaattttagcttgtaagaaaagtcag 383

                                                                       
Query: 361 gtgctcattttaatgctgctatagaataggtactattgccaatccttaatggatactatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgctcattttaatgctgctatagaataggtactattgccaatccttaatggatactatt 323

                                                                       
Query: 421 agtagtatggatagttatatggtgtttacttgattccagacacatgtcaaagcattacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtagtatggatagttatatggtgtttacttgattccagacacatgtcaaagcattacat 263

                                                                       
Query: 481 tctttatcctttgaggcaaacctatggtagagatgcagttattatctattaattcagatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctttatcctttgaggcaaacctatggtagagatgcagttattatctattaattcagatg 203

             
Query: 541 ca 542
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)