BAC Information

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BAC

Clone NameMSMg01-330C10
ChromosomeX (Build37)
Map Location 133,151,636 - 133,151,867
singlet/doubletsinglet
Overlap genenone
Upstream gene4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1
Downstream geneTceal3, Tceal1, Morf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303, Il1rapl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330C10.T7 (MSMg01no330_c10.b1)MSMg01-330C10.TJ (MSMg01no330_c10.g1)
ACCAG446784AG446785
length734740
length of high quality
(start - end)
232 (126 - 357)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no330_c10.b1 PHD_FILE: MSMg01no330_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:49 2005CHROMAT_FILE: MSMg01no330_c10.g1 PHD_FILE: MSMg01no330_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCCATCTACTTCCATTCACACTGTTCCCACATTATTCCTGGTATTATG
TGTGGCACTGTATGTTTTTACCACGAAGAGTACTGCTGCGTTACATGCGG
TGCCAAAGCCTTACTCCTACAGAACTTCTTGTAGCCATGTGTTCAATATC
TTGGATATTTAGCTGAGGATCCATTGGAGATGGCTTCAGGTAGGAACAAT
CTGTGAAATGAAAAGAAGACTGTCTGCAATGTGGATTTATCCTGTGCCAG
TCCAGTCATTTCTGTCGTATATTTCACATTGCCCAATGAGGGGGTTTGGT
CCACAGACCTTTTGGTTAACCCCCGCCCCCACTGGGATAACAGCTTTCCT
CTTATTAGAGAGCTTCTCCACTACATAAAAAAATCCAGCACCTTGCTTTT
GTTCTCTGTAAATAGAATCCTGATGTGAAATCTACAGTGTAGACTTCCCT
ATTCCTTTCGCCCTTTCACTGAAATCTGACTTAACTTCTAGATTAGCATG
TGTTACAGATACACTCTTATTGGATATGTAACCTGGCACAGCCTCTTTGG
AAGCCCATATATAAGGCCAAAACATAAGAAAAACTATTAAAAATAGGTGA
GATGGTTCAATGGGTTATATGAACCCCACGGGAGCGTGAAGAGCTAATTA
TCACACCCAGCCTCCTCATAAAGCCTGATGTGGT
CCATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAATATTCAGGTGACAGCAGATGCTGGCAAGGATGAGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACAACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAATTTTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCNGTGGCTTACCTNNACAAGACCCCCCTACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAACAAAAAAATATATAATAGCCAG
AAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGTATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTACGACATTCCTAGTCAAATGGATGGACCTGCAGGGTATCATCCTGAGT
GAGGTAACACATTCACCAAGGAACTCACACCATATGTACTCCCTGATTAG
TGGATATTAGCCCCAAACCCCAGATACCGAATATATATGACTAACTTTGT
TATACCACTGAAATTTACGAAGAATGAACACTGTAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_c10.b1 MSMg01no330_c10.b1 CHROMAT_FILE:
MSMg01no330_c10.b1 PHD_FILE: MSMg01no330_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:49 2005
         (232 letters)



>mm_chrX_133151436_133152067
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagtactgctgcgttacatgcggtgccaaagccttactcctacagaacttcttgtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagtactgctgcgttacatgcggtgccaaagccttactcctacagaacttcttgtagc 260

                                                                       
Query: 61  catgtgttcaatatcttggatatttagctgaggatccattggagatggcttcaggtagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgttcaatatcttggatatttagctgaggatccattggagatggcttcaggtagga 320

                                                                       
Query: 121 acaatctgtgaaatgaaaagaagactgtctgcaatgtggatttatcctgtgccagtccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatctgtgaaatgaaaagaagactgtctgcaatgtggatttatcctgtgccagtccag 380

                                                               
Query: 181 tcatttctgtcgtatatttcacattgcccaatgagggggtttggtccacaga 232
           |||||||||||||| |  ||||||||||| ||||||||||||||||||||||
Sbjct: 381 tcatttctgtcgtagaagtcacattgccccatgagggggtttggtccacaga 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)