BAC Information

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BAC

Clone NameMSMg01-331F08
ChromosomeX (Build37)
Map Location 76,832,403 - 76,832,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337, EG629116, LOC636082, EG667736, LOC100041373, EG636104
Downstream gene2410003J06Rik, LOC667749, LOC211702, LOC667755, LOC211705, LOC654474, LOC629153, LOC546338, LOC100042229, LOC667776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331F08.T7 (MSMg01no331_f08.b1)MSMg01-331F08.TJ (MSMg01no331_f08.g1)
ACCAG447655AG447656
length750755
length of high quality
(start - end)
337 (74 - 410)399 (70 - 468)
definitionCHROMAT_FILE: MSMg01no331_f08.b1 PHD_FILE: MSMg01no331_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:13 2005CHROMAT_FILE: MSMg01no331_f08.g1 PHD_FILE: MSMg01no331_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGNACGGCGGAATTC
CTTTAATTTTCTTTTGCTTAAATATATTTCCTCAAATCTTTTCATACCCT
TATTTTATTTATTATAAGATAGGAACTACATGTTCCTATCTTACAACTGG
AAGAGAGAGGAAAGGGCCGCAAATTGTCATCTTCTAGGCCTGACTGACAT
AGCCATCATGATCATGAACTCATGATAACTGTGGCTACATGAACTGTGTC
TGTATAGAATCTTTAACAATCAGTCACGGATGTGACTGTGACCCTCCGAA
ATACAGGCTCCTGACTGATTCTAGTGAGATAAGAAGTCATTTTTAGTTGT
CTACCCACTAGTGAATCTATCAGTTCATTGAGAAGTCCATAACTTATGGT
TATCCTGAAGGCTCTGGTTAAAGACAGCAGGTTACAAAACAAAACAAAAC
GATGTGCAGTGTGGGGATAAGGACTTATCAGAAAGACAGGGCTTGTAGGG
GTGTGAGAAAAATAAAAGAGAATAATCAGAATATACTACATACATATATG
AAATTGTCAGATATAATAAACTTTGCTTTTAAATCTTAGCTTTTTAATAT
TTCAAAGTTGTATGACCTCTTTCATGATACTTCCATTGCATGAAGTTCAA
TAATGGGAATATCATTAAACTGCAGTTTGCCCTATATTGCTTCATGCCAA
GAAATCAAAAAAATCTATTCCAAACATTTCTTCTCAGTATTATCAGAACG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGAAATACTGAATGTCTGAGAAGC
ACTTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCATTC
TGTCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCACAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCAAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAGCGAAAATGTGGAA
CATTTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTTATGT
AATTCCTAGGAAAATGGATGGACCTGGAGAGAGAGAGCATCATCCTGAGT
GAGGTAACCCAATCCCAAAAGAACTCAAATGATATGCACTCACTGATATT
TGGATATTAGGCCAGAAACTTAGAATACCCATTATATATGAGACCATTTT
GTCAAACATATGAATGTCATGAAACATCAAATACCATATTGAGGATCCTT
TGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_f08.b1 MSMg01no331_f08.b1 CHROMAT_FILE:
MSMg01no331_f08.b1 PHD_FILE: MSMg01no331_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:13 2005
         (337 letters)



>mm_chrX_76832015_76832751
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttcctcaaatcttttcatacccttattttatttattataagataggaactacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 atatttcctcaaatcttttcatacccttattttatttattataagataggaactacatgt 666

                                                                       
Query: 61  tcctatcttacaactggaagagagaggaaagggccgcaaattgtcatcttctaggcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tcctatcttacaactggaagagagaggaaagggccgcaaattgtcatcttctaggcctga 606

                                                                       
Query: 121 ctgacatagccatcatgatcatgaactcatgataactgtggctacatgaactgtgtctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctgacatagccatcatgatcatgaactcatgataactgtggctacatgaactgtgtctgt 546

                                                                       
Query: 181 atagaatctttaacaatcagtcacggatgtgactgtgaccctccgaaatacaggctcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 atagaatctttaacaatcagtcacggatgtgactgtgaccctccgaaatacaggctcctg 486

                                                                       
Query: 241 actgattctagtgagataagaagtcatttttagttgtctacccactagtgaatctatcag 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acagattctagtgagataagaagtcatttttagttgtctacccactagtgaatctatcag 426

                                                
Query: 301 ttcattgagaagtccataacttatggttatcctgaag 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcattgagaagtccataacttatggttatcctgaag 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)