Query= MSMg01no332_p17.b1 MSMg01no332_p17.b1 CHROMAT_FILE:
MSMg01no332_p17.b1 PHD_FILE: MSMg01no332_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:01 2005
(639 letters)
>mm_chrX_7013684_7014722
Length = 1039
Score = 882 bits (456), Expect = 0.0
Identities = 532/585 (90%), Gaps = 42/585 (7%)
Strand = Plus / Minus
Query: 97 tggcacagagacctcacacagtgaatgtagacccttaaacatgggacacttccacatttg 156
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1039 tggcacagagacctcacacagtgattgtagacccttaaacatgggacacttccacatttg 980
Query: 157 gaaatggacttctgcagactgcagaaatctttcaccatgagcaaagaccctttaatgtgt 216
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 979 gaaatggacttctgcagactgcagaaatctttcaccatgagcaaagacactttaatgtgt 920
Query: 217 cagactcagacaccgagacttaaacattctcaatgcaa---------------------- 254
||||||||||||||||||||||||||||||||||||||
Sbjct: 919 cagactcagacaccgagacttaaacattctcaatgcaaactcagaatgaccttaacttca 860
Query: 255 --------------------tgaacacatcagatatcctgcactgcacacagatcaacaa 294
||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 859 aaccttactgtgtaaagttttgaacacatcagagaccctacactgcacacagatcaacaa 800
Query: 295 atccatcagagttaatattaaacacttgggtcacagagcatagggagtccaaagaccctg 354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 799 atccatcagagttaatattaaacacttgggtcacagagcatagagagtccaaagaccctg 740
Query: 355 tagtctgaattcagacctccaactccgcaaggatcaaactccagaacagagactctcaac 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tagtctgaattcagacctccaactccgcaaggatcaaactccagaacagagactctcaaa 680
Query: 415 caaccagtggctccacagccagattatgggaccccagatgattccagtaggaccgttggg 474
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 679 caaccagtggctccacagccagagtatgggaccccagatgattccagtaggatcgttggg 620
Query: 475 acacgaattggctacagttttatagtcccaacaccttgaaaactgatctgctgatatgtc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acacgaattggctacagttttatagtcccaacaccttgaaaactgatctgctgatatgtc 560
Query: 535 acatttaaaattgggaagcacagagcctttccttatcagctagcttcactttctctcgat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acatttaaaattgggaagcacagagcctttccttatcagctagcttcactttctctcgat 500
Query: 595 tccctttctagntatttaaatgctgcacccacacttacaccccgt 639
||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 499 tccctttctagttatttaaatgctgcacccacatttacaccccgt 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_p17.g1 MSMg01no332_p17.g1 CHROMAT_FILE:
MSMg01no332_p17.g1 PHD_FILE: MSMg01no332_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:02 2005
(743 letters)
>mm_chrX_6850369_6851506
Length = 1138
Score = 1381 bits (714), Expect = 0.0
Identities = 734/744 (98%), Gaps = 7/744 (0%)
Strand = Plus / Plus
Query: 1 gcattatctctgagctcggacaaactgagtatcatggtggcttttgttgcaatttcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcattatctctgagctcggacaaactgagtatcatggtggcttttgttgcaatttcaaca 260
Query: 61 ccagtttatgatttgtttatcattacttttttc-tttttttggggggggagagggtacag 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ccagtttatgatttgtttatcattacttttttcttttttttggggggggagagggtac-- 318
Query: 120 tataatgattcagcttccagggaggaaaatggtgtaagacacagataaggcctagagaca 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 ----atgattcagcttccaggggggaaaatggtgtaagacacagataaggcctagagaca 374
Query: 180 gagcaatgcattaaccatgaaatcggaaattagaataggatgtaagcaacttcaactgta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gagcaatgcattaaccatgaaatcggaaattagaataggatgtaagcaacttcaactgta 434
Query: 240 tgaaagattgaagagagaaagccaagttcacaccatgcctttgggtcttagtgtgagaaa 299
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 tgaaagattgaagagagaaagccaagttcacaccatgcctttgggtcacagtgtgagaaa 494
Query: 300 taatggttctataagggaaaggaaaataattaaaatgtattttaaacgagacaaggatcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taatggttctataagggaaaggaaaataattaaaatgtattttaaacgagacaaggatcc 554
Query: 360 aaatttataattatgaaggcctatcaaagtggaacaggggctagaaagaaggtcacagtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaatttataattatgaaggcctatcaaagtggaacaggggctagaaagaaggtcacagtg 614
Query: 420 agaaagccagtggttaagaacgcttgctgtttttgcagagaaccacacctcctaatcttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agaaagccagtggttaagaacgcttgctgtttttgcagagaaccacacctcctaatcttt 674
Query: 480 ctaaggagcgccactctctgatgattaagcattcacatacataagcctaccgggggccac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctaaggagcgccactctctgatgattaagcattcacatacataagcctaccgggggccac 734
Query: 540 tcttattcaaaccaccatagaagcttacacttcagttgttccattagactacaatgcctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcttattcaaaccaccatagaagcttacacttcagttgttccattagactacaatgcctc 794
Query: 600 cagtaatgtacactaatccttctatcctctctgggaatccacctttccatatacatttcg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cagtaatgtacactaatccttctatcctctctgggaatccacctttccatatacatttcg 854
Query: 660 ctcttgccttgactgcttgagagatgcttcagagcataagattgcatactgttcttgcaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ctcttgccttgactgcttgagagatgcttcagagcataagattgcatactgttcttgcaa 914
Query: 720 tgactctcatgtttgattgctaga 743
||||||||||||||||||||||||
Sbjct: 915 tgactctcatgtttgattgctaga 938
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1138
Length adjustment: 10
Effective length of query: 733
Effective length of database: 1128
Effective search space: 826824
Effective search space used: 826824
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
