Query= MSMg01no333_c14.b1 MSMg01no333_c14.b1 CHROMAT_FILE:
MSMg01no333_c14.b1 PHD_FILE: MSMg01no333_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:16 2005
(349 letters)
>mm_chrX_139315745_139316493
Length = 749
Score = 613 bits (317), Expect = e-180
Identities = 344/361 (95%), Gaps = 14/361 (3%)
Strand = Plus / Minus
Query: 1 ctaggaatatttgccatttggctactaatgaatgcaactgaattgattgtttatattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctaggaatatttgccatttggctactaatgaatgcaactgaattgattgtttatattttt 380
Query: 61 ttaggcagagacagtacaggtttcagatcagaattgccaagtaagacaattgttttgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttaggcagagacagtacaggtttcagatcagaattgccaagtaagacaattgttttgtgt 320
Query: 121 tccagttaaaatgtataatctattcaaaggtgaagactaacgtgtggttagtaaagggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tccagttaaaatgtataatctattcaaaggtgaagactaacgtgtggttagtaaagggaa 260
Query: 181 tttttggacttgagcctaaaaatctgggttagagacttacctccgtctttggcttagct- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttttggacttgagcctaaaaatctgggttagagacttacctccgtctttggcttagctg 200
Query: 240 ---------ag----gtcattgcccaactttagaatgcagcatcttctccaaagcccttc 286
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gatcatctcagctaagtcattgcccaactttagaatgcagcatcttctccaaagccctag 140
Query: 287 ctttaacagtgtgtacagagtattctgaaaggagcctggcggagggaagctgaattctct 346
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 139 ctttaacagtgtgtacagagtattctgaaaggagcctggctgagggaagctgaattctct 80
Query: 347 c 347
|
Sbjct: 79 c 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_c14.g1 MSMg01no333_c14.g1 CHROMAT_FILE:
MSMg01no333_c14.g1 PHD_FILE: MSMg01no333_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:16 2005
(345 letters)
>mm_chrX_139125029_139125770
Length = 742
Score = 617 bits (319), Expect = 0.0
Identities = 340/351 (96%), Gaps = 9/351 (2%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacacagagaaaccctgtctcgaaccccccc------ccaaaaaa 54
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 195 caggacagccagggttacacagagaaaccctgtctcgaaccccccctcccccccaaaaaa 254
Query: 55 agaaaaaaaaaacagtaagttcttccaacttccaggacgccattttgacacctggttatt 114
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agaaaaaaaa--cagtaagttcttccaacttccaggacgccattttgacacctggttatt 312
Query: 115 gtatcctaactgtatgtgagactcttatttttaagtgattgtaagaatttattccttctt 174
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 313 gtatcctaactgtatgtgagactcttatttt-aagtgattgtaagaatttattccttctt 371
Query: 175 aattttttttgagattttaattttatgtgtatggatactttgcctgcatgtatgtctctg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aattttttttgagattttaattttatgtgtatggatactttgcctgcatgtatgtctctg 431
Query: 235 cttctggtatgtctcggcaccatctgtgtgccccgtgcctgctggaagccagaagagggc 294
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 432 cttctggtatgtctcggcaccacctgtgtgccccgtgcctgctggaagccagaagagggc 491
Query: 295 gtgggatccccggggacttgcagtttcagatggtaggacctactaccatgt 345
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtgggatccccggggacttgcagtttcagatggtaggacctactaccatgt 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 742
Length adjustment: 9
Effective length of query: 336
Effective length of database: 733
Effective search space: 246288
Effective search space used: 246288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
