BAC Information

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BAC

Clone NameMSMg01-334E12
ChromosomeX (Build37)
Map Location 105,531,896 - 105,703,862
singlet/doubletdoublet
Overlap geneGm378, LOC668516
Upstream geneLOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
Downstream geneGm379, Brwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334E12.T7 (MSMg01no334_e12.b1)MSMg01-334E12.TJ (MSMg01no334_e12.g1)
ACCAG449817AG449818
length709710
length of high quality
(start - end)
508 (61 - 568)425 (58 - 482)
definitionCHROMAT_FILE: MSMg01no334_e12.b1 PHD_FILE: MSMg01no334_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:39 2005CHROMAT_FILE: MSMg01no334_e12.g1 PHD_FILE: MSMg01no334_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,703,465 - 105,703,862)(105,531,896 - 105,532,320)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCATAAGGATCCGCGGAATTCTCTACT
ATCCTATGAAGGATATTTTTTCTCTATATTTTTAGAGATATTGGCTTGTA
GCTGACTTTTCTTCGATTATTTTGACATTGGTATGAATGTGAACTATAGA
CTAATTTAGGAAGTGCTTCTATTTCTATTCCATATGTCACCAAACTCTAA
TATGCATTTTTATATTTCTTCTATTATCTTTGGAAATGATTTGATATTTT
TAAACTCCTCCTTCCGATCTGGGCTAGTGCCCTGAGCAGACATTGGGCAC
ATACTTTGCAGCCAGTCCCACAATATCCAGAGGAAGCTCCAATCCCAGGT
GCTCTAACACTCCCAGAATCATAGGATCAGAGGTGAGGAGCACACATCAT
CTGCTCCATCACTGGGAGTAACTGGGACTAGTGGGACCCAGGTACCCAAG
ATTCTAACCAGACCAGTAGCACTGGTTCCTTCTGGTATGGGCCGGTGCCC
TGAGTAGACCTTGACCACAAACTTCGCAGCCAATATTACAACATTCAGAG
GAAGCTCCACTCCCAGGTGTTCTAATATGCCCAGGATCACAGGATCACAA
GATCATAGTACTCACAGGATCACAGGATCACAGGATCACAGGATCACAGG
ATCTCAGGATCACAGGATCTCAGGATCACCGGACCTTGTTCACTCCAAGA
TCTCAGGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCAA
AAAAATTCAGAAAGTGAGCTTGGAGGTCAATTTTAAAGAAGAAATAAATA
GAAATCCTTTGATGGATTTAAAAAGTAGATTCTAAAACTCATAGGAAAGG
TTAAAAATAATAATGCAGTAAATACTGTGGGAGATTTAAAAGGGAATACA
TTCCCAAGAGAAATAGAAAACATAGAATACAAAAGACAAGGAAAATCAAC
AAGTAATTTTTATATTTTTTATATAATATAGTAGGCTTAAAAGCAATAGT
TTTTTTTTGGATGAAGATCATCATGTATATTTTTTAAACTTCATAAAGTT
ATAATAAATATAATACCTATAACTCTTGGTGGCTAGAAAGAGTTTTTAAA
TTATCACAAGGTCTGCTCCCAAAGAAACAGTTTGACTCTTGACAATTAGA
CATTTGTATGTGACTCTAATAACGAATGAAATATAGTAGGTCAGAATAAA
TATATAATGTAGAGAGCTACTCATAAATCCATCAAGAGATATTTATATGA
CCTACTGTCTCTGAACAAGAATTTATGAATGTTATGGCTATTACAACTTT
ATTTTTTGAAATACACCTCCAGAGATATTTATTATATATAGGTTATAGAA
TACAATATTTGCGTGACTTTTTCTGGGGATACTTAAAGTAATATCCACTA
CTCTAGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_e12.b1 MSMg01no334_e12.b1 CHROMAT_FILE:
MSMg01no334_e12.b1 PHD_FILE: MSMg01no334_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:39 2005
         (508 letters)



>mm_chrX_105703465_105704372
          Length = 908

 Score =  762 bits (394), Expect = 0.0
 Identities = 397/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatattttttctctatatttttagagatattggcttgtagctgacttttcttcgattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggatattttttctctatatttttagagatattggcttgtagctgacttttcttcgattat 339

                                                                       
Query: 61  tttgacattggtatgaatgtgaactatagactaatttaggaagtgcttctatttctattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tttgacattggtatgaatgtgaactatagactaatttaggaagtgcttctatttctattc 279

                                                                       
Query: 121 catatgtcaccaaactctaatatgcatttttatatttcttctattatctttggaaatgat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 278 catatgtcaccaaactctaatatgcatttttatatttcttctattatctttggagatgat 219

                                                                       
Query: 181 ttgatatttttaaactcctccttccgatctgggctagtgccctgagcagacattgggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttgatatttttaaactcctccttccgatctgggctagtgccctgagcagacattgggcac 159

                                                                       
Query: 241 atactttgcagccagtcccacaatatccagaggaagctccaatcccaggtgctctaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 atactttgcagccagtcccacaatatccagaggaagctccaatcccaggtgctctaacac 99

                                                                       
Query: 301 tcccagaatcataggatcagaggtgaggagcacacatcatctgctccatcactgggagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tcccagaatcataggatcagaggtgaggagcacacatcatctgctccatcactgggagta 39

                                                 
Query: 361 actgggactagtgggacccaggtacccaagattctaac 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  actgggactagtgggacccaggtacccaagattctaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_e12.g1 MSMg01no334_e12.g1 CHROMAT_FILE:
MSMg01no334_e12.g1 PHD_FILE: MSMg01no334_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:39 2005
         (425 letters)



>mm_chrX_105531696_105532520
          Length = 825

 Score =  768 bits (397), Expect = 0.0
 Identities = 418/425 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaagtgagcttggaggtcaattttaaagaagaaataaatagaaatcctttgatggat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||
Sbjct: 201 cagaaagtgagcttggaggtcaattttaaagaagaaataaaaagaaatgttttgatggat 260

                                                                       
Query: 61  ttaaaaagtagattctaaaactcataggaaaggttaaaaataataatgcagtaaatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaagtagattctaaaactcataggaaaggttaaaaataataatgcagtaaatactg 320

                                                                       
Query: 121 tgggagatttaaaagggaatacattcccaagagaaatagaaaacatagaatacaaaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggagatttaaaagggaatacattcccaagagaaatagaaaacatagaatacaaaagac 380

                                                                       
Query: 181 aaggaaaatcaacaagtaatttttatattttttatataatatagtaggcttaaaagcaat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aaggaaaatcaacaagtaatttttatattttttatataatatagtaggcttaaaagcatt 440

                                                                       
Query: 241 agtttttttttggatgaagatcatcatgtatattttttaaacttcataaagttataataa 300
           ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttctcttgggatgaagatcatcatgtatattttttaaacttcataaagttataataa 500

                                                                       
Query: 301 atataatacctataactcttggtggctagaaagagtttttaaattatcacaaggtctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataatacctataactcttggtggctagaaagagtttttaaattatcacaaggtctgct 560

                                                                       
Query: 361 cccaaagaaacagtttgactcttgacaattagacatttgtatgtgactctaataacgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccaaagaaacagtttgactcttgacaattagacatttgtatgtgactctaataacgaat 620

                
Query: 421 gaaat 425
           |||||
Sbjct: 621 gaaat 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)