CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGG
AATTCACTCATATATCCCAGATCTTTGGGTACAGAATTAGCATTACAATA
CATAGACCAAACCTCAATCTATACAAAGAACTACAGGCAACTAAAGAATG
CTGAAAGGGGGTGAAATTCTTTCCCTGTGAAAAAGATACAACTGATTTTC
CTAAAAAACTTGCATACAAGTAACATTATACATACTGAGCAGGTTGTATT
AGGAATTTGTATGTATATGCACATACATATATGCATAAATATATGTATGT
AATGATAATTAAGGTAAAAAGAGGCAATGGGTGAGAAATAGTGCAAAGAG
AGTATACAGAAAGACTTGAAGGAGAAAAGGAAGGGGAAATGGTATAATTG
CACAACAATCTCAAAATATAAAAGAAATAATATTTACAAAAACCAAGTCC
TGAACAGTGTAAATAATAGATGACATATCAAAAAATAGGTGGTGAATCAC
ATGGGGACTGACCCCAGATGAAGGGTTTCAAATAATCAACTGTTGAGAGA
GGAAGAACCATCCTTCCCCAAGGATGAATCCCTGAATGGTTGGTTATATA
AAAGCAAATGGTCAGTCCTAGAAATATACACTTGTCCCCATTTAAGGACC
TCATTTGTCTCCATTTTTGAGGACCAGGCCTGGTTTCAAAAAAGGCCATA
AAGCACCAGCTTCAAGAATAGACCATAATAAGTCCCAAAA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCAGAAAATTCTATCTGAGTAATTAGAGATCCATGTATAC
AGGAAATGTTCAAGTGTGCGTGCAATGCATGACACTATTCCCTACATTCC
AAGCTAAACTGATAAAAATGGAAAGGTCTACTTAGACTAACATTTATTGT
TAAGCACACAGTCAATAAATCTTACTTTGTGGATGTATTGCGATTAAACA
GATATGTTCAGAGTTTTCTTTTTCTTGGCATTACTGGAGGCAGATACAAG
ACATGCATCAATAACTTTTTTTTTCTATTGCTCTGAAGAGACATCATGAC
TATGCTATCAATGCTAAGTCTCATAAAAGAAAGCAATTAATAGGGGCTGG
CTTACCGGTTCAGAGGGTTAGTCCATTCTCATCATGGTGGGAAGCATGCT
GGAACACAGGCACAGGTGCTGGAGAAGTAGTGAGAGTTCTACATCCAGAT
TGGCAGGCAGCAGGAAGAATGAATGACACTGGTCCTAGCTGGAGCATTTG
AAACTTCAAAACACACCTACTCCAACAAGGCCACACCTCCTAATTATGCC
TTTCTCTGTGAGCCTATAAGGGCCATTTTCATTCAAACTACCCCAGCCAG
TGTAAAGAATTCTTTTCTTTCTAACAACTGGCCACCATACATCTCTTAAT
ATCTTCTATTGTCTTAGAGAAGCAGGGCTATCT

Query= MSMg01no334_e18.b1 MSMg01no334_e18.b1 CHROMAT_FILE:
MSMg01no334_e18.b1 PHD_FILE: MSMg01no334_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:41 2005
         (668 letters)



>mm_chrX_31999607_32000673
          Length = 1067

 Score = 1133 bits (586), Expect = 0.0
 Identities = 646/666 (96%), Gaps = 2/666 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgggtacagaattagcattacaatacatagaccaaacctcaatctatacaaagaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctttgggtacagaattagcattacaatacatagaccaaacctcaatctatacaaagaact 259

                                                                       
Query: 61  acaggcaactaaagaatgctgaaagggggtgaaattctttccctgtgaaaaagatacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaggcaactaaagaatgctgaaagggggtgaaattctttccctgtgaaaaagatacaac 319

                                                                       
Query: 121 tgattttcct-aaaaaacttgcatacaagtaacattatacatactgagcaggttgtatta 179
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 tgattttcctaaaaaaacttgcatacaagtaacagtatacatactgagcaggttgtatta 379

                                                                       
Query: 180 ggaatttgtatgtatatgcacatacatatatgcataaatatatgtatgtaatgataatta 239
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 ggaatttgtatgtatatgcatatacatgtatgcataaatatatgtatgtaatgataatta 439

                                                                       
Query: 240 aggtaaaaagaggcaatgggtgagaaatagtgcaaagagagtatacagaaagacttgaag 299
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 aggtaaaaagaggcaatgggtgagaaatagtgcaaagagagtatatagaaagacttgaag 499

                                                                       
Query: 300 gagaaaaggaaggggaaatggtataattgcacaacaatctcaaaatataaaagaaataat 359
           ||||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct: 500 gagaaaaggaaggagaaatggtataaatgcgcaacaatctcaaaatatgaaagaaataat 559

                                                                       
Query: 360 atttacaaaaaccaagtcctgaacagtgtaaataatagatgacatatcaaaaaataggtg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttacaaaaaccaagtcctgaacagtgtaaataatagatgacatatcaaaaaataggtg 619

                                                                       
Query: 420 gtgaatcacatggggactgaccccagatgaagggtttcaaataatcaactgttgagagag 479
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 620 gtgaatcacatggggactgaccccagatgaagggtttcaaaaaatcaaatgttgagagag 679

                                                                       
Query: 480 gaagaaccatccttccccaaggatgaatccctgaatggttggttatataaaagcaaatgg 539
           ||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 680 gaagaaccatctttccacaaggatgaatccctgaatggttggttatataacaccaaatgg 739

                                                                       
Query: 540 tcagtcctagaaatatacacttgtccccatttaaggacctcatttgtctccatttttgag 599
           |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 740 tcagtcttagaaatatacacttgtccccatttaaggacctaatttgtctccatttt-gag 798

                                                                       
Query: 600 gaccaggcctggtttcaaaaaaggccataaagcaccagcttcaagaatagaccataataa 659
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 799 gaccaggcctggtgtcaaaaaaggccataaagcaccagcttcaagaatagaccatagtaa 858

                 
Query: 660 gtccca 665
           ||||||
Sbjct: 859 gtccca 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space:   695506
Effective search space used:   695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)