BAC Information

Click to search

BAC

Clone NameMSMg01-334N14
ChromosomeX (Build37)
Map Location 115,435,804 - 115,436,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624284, LOC665066, EG624388, ENSMUSG00000072994
Downstream geneLOC100039551, Tgifx1, LOC665087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334N14.T7 (MSMg01no334_n14.b1)MSMg01-334N14.TJ (MSMg01no334_n14.g1)
ACCAG450244AG450245
length734728
length of high quality
(start - end)
317 (70 - 386)318 (77 - 394)
definitionCHROMAT_FILE: MSMg01no334_n14.b1 PHD_FILE: MSMg01no334_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:24 2005CHROMAT_FILE: MSMg01no334_n14.g1 PHD_FILE: MSMg01no334_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAAGATCCGCGGA
ATTCATTTGATTACCCAAAAAAAACATTTGCTGGAAAGATTGAAGTAAAC
AATCTCATAGGCCACTAGATATCTTTAAAAATATTAGGAACAGCATTGCA
AAGGTAATTTGACTCATATCTTTGAATAAACTCTGCTTATAAAAATTATG
TTTATATTAATAATAGAAATATAACCATAACTCTATATTCATTAGTTACA
AACATATGTAGTTCAAATACTTATCCTTGTTTGAGTGCAAAACACTTGAA
ATGATTTAATAAGGAGCAGTAAAACATGGTTGAAAGGATTTTATACCACA
AAGTCAAGGCTGACATCGTTATGGATATGAAAGATGAGGGGAAACCAGAA
AGGTATTAAAAATTCTGTTATTGACACTTTATTTTGAGATGGTATTTAGA
AAGTACCTCAAGAAAAACTTTATAAGTCTAAAGGTCATAGAGAAACACAG
TTGGGAAAACATAATTAATCATTTTAAATATAGAATTTAAATGATCATAC
TAGAGGAGGTCATCTCTGGAGGGACTATTGGCAGAAAAAAATGGGAGCCA
AAATGATCTCTTAAGAGTAGTAATTAATTAGTACATAATTAGAATACAAA
TAAATAGTAAAGACAAAGGTGTAGTTGATGGAGTCATAGGATCCAAGGTA
AGAAAATATATTAGGACACAAGGAGTTGTCTGTC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCAGACCTTTAAAGAAGACCTA
ATACCAATACTCTTCAAACTATTCCACAAAATAGAAACAGAAAGTACACT
ACCTAATTTATTCTATGAAGCCACTATTACACTTATACCTAAACCACACA
AAGACCCAATAAAGAAAGAGAACTTCAGACTAATTTCCCTTATAAACATT
GATGCAAAAAATACTCAATAACATTTTTGCCACCCGAATTTAAGTACACA
TCAAAAACATCATTCACCATGATCTAGTAGGCTTCATCTCATGGAAGCAG
AGATGGTTCAATATATGGAAAACCATCAATGTAATCCACTACATAAACTA
ATTTAAAGAAAAAAAACACCCGGAACAATTCATTAGATGTCTGAAAAAGT
ATTGCACAAATTAATATCCCTTCTTGTTAAAGTCTGGGAATTCCGGAATT
AAAGACCATAATAAACTAGTAAAGCAATATACGCAAACGGTAGCCAAATC
AACTAAATGTAGCTAAACATGAAGCAAATGCACTAATATCTGAGACTAGA
CACTCTTTCTATATCTATTCAACATAGTACTTGAAATTCTAGCTAGGGTA
ACTAGACAATAGATGGAGGACAAAGGGATACAAATTGGAAAGGAATAAGT
CACAATATCACTATTTACCGAAGATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_n14.b1 MSMg01no334_n14.b1 CHROMAT_FILE:
MSMg01no334_n14.b1 PHD_FILE: MSMg01no334_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:24 2005
         (317 letters)



>mm_chrX_115435449_115436165
          Length = 717

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaacatttgctggaaagattgaagtaaacaatctcataggccactagatatctttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaaaacatttgctggaaagattgaagtaaacaatctcataggccactagatatctttaaa 613

                                                                       
Query: 61  aatattaggaacagcattgcaaaggtaatttgactcatatctttgaataaactctgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aatattaggaacagcattgcaaaggtaatttgactcatatctttgaataaactctgctta 553

                                                                       
Query: 121 taaaaattatgtttatattaataatagaaatataaccataactctatattcattagttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 taaaaattatgtttatattaataatagaaatataaccataactctatattcattagttac 493

                                                                       
Query: 181 aaacatatgtagttcaaatacttatccttgtttgagtgcaaaacacttgaaatgatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aaacatatgtagttcaaatacttatccttgtttgagtgcaaaacacttgaaatgatttaa 433

                                                                       
Query: 241 taaggagcagtaaaacatggttgaaaggattttataccacaaagtcaaggctgacatcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaggagcagtaaaacatggttgaaaggattttataccacaaagtcaaggctgacatcgt 373

                            
Query: 301 tatggatatgaaagatg 317
           |||||||||||||||||
Sbjct: 372 tatggatatgaaagatg 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)