BAC Information

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BAC

Clone NameMSMg01-335E04
ChromosomeX (Build37)
Map Location 93,221,245 - 93,392,851
singlet/doubletdoublet
Overlap geneMsn, Psmb7-ps1
Upstream gene9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l
Downstream geneLOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335E04.T7 (MSMg01no335_e04.b1)MSMg01-335E04.TJ (MSMg01no335_e04.g1)
ACCAG450557AG450558
length783768
length of high quality
(start - end)
346 (78 - 423)359 (77 - 435)
definitionCHROMAT_FILE: MSMg01no335_e04.b1 PHD_FILE: MSMg01no335_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:57 2005CHROMAT_FILE: MSMg01no335_e04.g1 PHD_FILE: MSMg01no335_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,221,245 - 93,221,589)(93,392,533 - 93,392,851)
sequence
GTATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCGGGGGATTCTAAATCTAGTGGGGAAGGGGGTGACTGCCA
CTCAGCCCTGGGCAGAGTGGCAGGCTGGGCTAAGCCTGCATGTTCTGGAA
AGGCCAGAAATGATGTCATGGGACTCTTTGGGCTGCAACAACAGGAAACC
ACTGAATGTTTACATTGGCTCCCAGAACCTAGGCGGCCTGTTTTGTCTTT
ACTTCCTCAGTCTATCTGTTTCCTCTGATTCAAGTACTATGAAGAGTGGC
TCACTACCCAGGCTAGGAAAAGCGTAAGGGAGGCCCAAAAAGAAAGCCTC
CTTCCCAGTCTAGAGAGCCAGATGATTGCGAGGGTAAGGCTGGATTTACC
CTATCTGGGGCCCTGCCAAGGGTAGCACTTACGGCAGGGGAAGCAAAAGC
AAAGGGTTTGTGCTTATAGTACTCCATAAGCAACTTCAGAAATATCCTTA
GGAACTAAGGTCTAAACTTATATCCATCTTTATATCTGCAAATCATATCA
CTATGTCCATGCTTATAAAAATTTACCCTGTATTCTACTTTAACCAACTA
TGCACTTTGAGCGCCCAGTGTCTCCTTTATTGTTCCATTGTGTTGTCTGA
CTCAGCTTATGTTTCTCCTCATTATGCCTATACTTGCACCCTTGTATTGT
TAATCTCTTTTTTTATTTGTGTTTTCTACTTGTTTTTTATTGTATTTTTG
TCTGCTTTACCCTCTTATACATCCATACAACAA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTAATTAGACAAGTACTTAGAT
CTAGAATTAATTTAGACACAAAGAACTTAGACTATGCAGAGAGACACAGT
TACCAGGATGAATTAGTAATTACTTTCACTAAAAGCTTACATATTGCTGG
AGAGATGGCTCAGCTGATAAGAGCACTGACTGCTTTTCTAGAGGTCCTGA
ATTCAAATCCCAGCAACCGCATGGTAGCTTGCAACCATCTGTAATGAGAT
CTGTTGCCCTCTTCCGGTGTGTCTAAAAGCATAGAAAAAATGTCATGGTC
ATATAGAGTAAAAATATATTTATGCCAACTGAGCAATTAGAATATTTCTT
TCTAGGAGTGTAACATTTTCAATGGGCTTGTAAAAATATATAGAATTTCA
ATATGTTAAGCTACATATGACTGGCAATCTCCACATGGGTAGCATATTTA
AGTAAATGTACACATGTTTACTACCAGAGACTTTATTTTAGGAATGACAT
ATATTGCATCTGAGGGAATGTATGCGTTATTACTTCTTCATCATGATTTT
TATGCCCACACACCGTATAAAACTCCCTCCCATTGGGCTATTCCTCCCCT
ATTTCTTCCCAAAGACCCTTTCACCTCTCCCCTTGTTGTTTCCCCTTCTC
CCCCTTTTCTTTTTTCGTTCCGCCCCTGTCTTCTCCCCCCCACCTATTTC
GTCTACCTTCCCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_e04.b1 MSMg01no335_e04.b1 CHROMAT_FILE:
MSMg01no335_e04.b1 PHD_FILE: MSMg01no335_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:57 2005
         (346 letters)



>mm_chrX_93221044_93221789
          Length = 746

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtggggaagggggtgactgccactcagccctgggcagagtggcaggctgggctaagcctg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtggggaagggggtgactgccactcagccctgggcagagtggcaggctgggctaagcctg 261

                                                                       
Query: 62  catgttctggaaaggccagaaatgatgtcatgggactctttgggctgcaacaacaggaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catgttctggaaaggccagaaatgatgtcatgggactctttgggctgcaacaacaggaaa 321

                                                                       
Query: 122 ccactgaatgtttacattggctcccagaacctaggcggcctgttttgtctttacttcctc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccactgaatgtttacattggctcccagaacctaggcggcctgttttgtctttacttcctc 381

                                                                       
Query: 182 agtctatctgtttcctctgattcaagtactatgaagagtggctcactacccaggctagga 241
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 382 agtctatctgtttcctctgattcaaatactatgaagagtggctcactacccaggctagga 441

                                                                       
Query: 242 aaagcgtaagggaggcccaaaaagaaagcctccttcccagtctagagagccagatgattg 301
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaagcggaagggaggcccaaaaagaaagcctccttcccagtctagagagccagatgattg 501

                                                        
Query: 302 cgagggtaaggctggatttaccctatctggggccctgccaagggt 346
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cgaggggaaggctggatttaccctatctggggccctgccaagggt 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no335_e04.g1 MSMg01no335_e04.g1 CHROMAT_FILE:
MSMg01no335_e04.g1 PHD_FILE: MSMg01no335_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:58 2005
         (359 letters)



>mm_chrX_93392533_93393291
          Length = 759

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaattagacaagtacttagatctagaattaatttagacacaaagaacttagactatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atttaattagacaagtacttagatctagaattaatttagacacaaagaacttagactatg 260

                                                                       
Query: 61  cagagagacacagttaccaggatgaattagtaattactttcactaaaagcttacatattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagagagacacagttaccaggatgaattagtaattactttcactaaaagcttacatattg 200

                                                                       
Query: 121 ctggagagatggctcagctgataagagcactgactgcttttctagaggtcctgaattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctggagagatggctcagctgataagagcactgactgcttttctagaggtcctgaattcaa 140

                                                                       
Query: 181 atcccagcaaccgcatggtagcttgcaaccatctgtaatgagatctgttgccctcttccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atcccagcaaccgcatggtagcttgcaaccatctgtaatgagatctgttgccctcttccg 80

                                                                       
Query: 241 gtgtgtctaaaagcatagaaaaaatgtcatggtcatatagagtaaaaatatatttatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gtgtgtctaaaagcatagaaaaaatgtcatggtcatatagagtaaaaatatatttatgcc 20

                              
Query: 301 aactgagcaattagaatat 319
           |||||||||||||||||||
Sbjct: 19  aactgagcaattagaatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)