BAC Information

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BAC

Clone NameMSMg01-335H09
ChromosomeX (Build37)
Map Location 61,353,573 - 61,532,058
singlet/doubletdoublet
Overlap geneEG627470, 3830417A13Rik, Slitrk4
Upstream geneLOC666729
Downstream geneLOC100040011, Ctag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335H09.T7 (MSMg01no335_h09.b1)MSMg01-335H09.TJ (MSMg01no335_h09.g1)
ACCAG450711AG450712
length692726
length of high quality
(start - end)
629 (64 - 692)500 (78 - 577)
definitionCHROMAT_FILE: MSMg01no335_h09.b1 PHD_FILE: MSMg01no335_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:14 2005CHROMAT_FILE: MSMg01no335_h09.g1 PHD_FILE: MSMg01no335_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,531,430 - 61,532,058)(61,353,573 - 61,354,072)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GGTATTCCGCATAAGTGATTTCAAAGCTATTGTTAGTTTTAGCTTAAAGA
ACTTTTCATTTATAAGCAAACACATTTCTGGGAATTGGATATACAAACAT
GTGGCTGGAGCTATTGAGATTTGAGTAAGTGAATTGAGCAGAGCAAAGAT
CTCAAAGAAATGGGTCTGAAAGTCTTTCTTGACTTGTGGCAAAGAATGGG
TTGTTAGAGATTCTAGGAGAAAAGCTTCTATAAGTTGGACCTCTTTCCCA
ACAGCCACTTCCCCCACAGACAGAAGGCAGAGACTTGCTTTCCTTAGTCA
AGCACCTACAAGGTGCAAGTAGGGAAAGGCAGCAAAATCATTTTCTTGTT
CAGAAATCAAACATTTGAAAGGTGTGAAGACAGCAGAGGTATCTACCCAG
TCCCTAGGTTTCTTTGCTTTCTAACTAAATTATCAATCTGTGTGAAACTG
ATATGAACATTAGCTTTTTCTCAGGACCTTCCTACATTTTTGTGTGTGCA
AACATTAATCTTTGGTTGCAAGGGATTCAGAAAGGGTGAGATCTGCAGCC
TTTAGATTTTTGGCAGTCAGCTGCTAAAGCTTCCTTAGTATAAACAAGTA
GGAACTAAAGAAGTGACTTTTCTTAATCATTTTCCCTCTTCT
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACATAGA
GAAGCCCTGTCTTGAAAAACCAAACAAACAAACAAACAAAAAAACAACAA
CAACAATAAAAACAACAAAAAAGCAAGTCCAAGAATACAGACAATTTTAT
TATGTGTATTATTACTATTTTGTTTTATTCCTTAAATATTATTTTTTAAT
CTCTGTTTTATAAGTTGAAGCTTACCAAAAAATCTACTTGGCTAAACAAA
AGAGAAAAAAAAATGACTGTTTCTGGCTGTCAGTGGTTTTTCTTTTCTTT
TTTTTTTTTCATCAAATGTCTTTTCTGTATCTCTTGAAAAGGATTCTGTG
ATTTATCAGAGTGTATTTATTTCCTTGTAAAATGATTTGCCTTTTACTTT
TCATCCTGTGTATGTGTATAGATGTGTTTATGTGTAGATTCATGCATATA
TGAAATGTAGGTGCATGTAAGGTCCAAGGGAGGGTGTTGAATCTGCTGAT
ACTAGACATAAAGAAGTTTTGAACTTCCAAATGCAGGTTCTGTGAATAGA
ACTTGTGTCCTCCACAGAAACAGTATGTACACTTACTCATTGAGCCTTCT
CTTCCCAAATAATAATGTATTTATGCTATGTGTTAAATCAATCTGGCCTC
TGTTGTAATGAACCCCTTTATAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_h09.b1 MSMg01no335_h09.b1 CHROMAT_FILE:
MSMg01no335_h09.b1 PHD_FILE: MSMg01no335_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:14 2005
         (629 letters)



>mm_chrX_61531230_61532258
          Length = 1029

 Score = 1178 bits (609), Expect = 0.0
 Identities = 624/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatttcaaagctattgttagttttagcttaaagaacttttcatttataagcaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 829 agtgatttcaaagctattgttagttttagcttaaagaacttttcatttacaagcaaacac 770

                                                                       
Query: 61  atttctgggaattggatatacaaacatgtggctggagctattgagatttgagtaagtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atttctgggaattggatatacaaacatgtggctggagctattgagatttgagtaagtgaa 710

                                                                       
Query: 121 ttgagcagagcaaagatctcaaagaaatgggtctgaaagtctttcttgacttgtggcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttgagcagagcaaagatctcaaagaaatgggtctgaaagtctttcttgacttgtggcaaa 650

                                                                       
Query: 181 gaatgggttgttagagattctaggagaaaagcttctataagttggacctctttcccaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaatgggttgttagagattctaggagaaaagcttctataagttggacctctttcccaaca 590

                                                                       
Query: 241 gccacttcccccacagacagaaggcagagacttgctttccttagtcaagcacctacaagg 300
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 589 gccacttcccccacagacagaaagcagagacttgctttccttagccaagcacctacaagg 530

                                                                       
Query: 301 tgcaagtagggaaaggcagcaaaatcattttcttgttcagaaatcaaacatttgaaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgcaagtagggaaaggcagcaaaatcattttcttgttcagaaatcaaacatttgaaaggt 470

                                                                       
Query: 361 gtgaagacagcagaggtatctacccagtccctaggtttctttgctttctaactaaattat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtgcagacagcagaggtatctacccagtccctaggtttctttgctttctaactaaattat 410

                                                                       
Query: 421 caatctgtgtgaaactgatatgaacattagctttttctcaggaccttcctacatttttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caatctgtgtgaaactgatatgaacattagctttttctcaggaccttcctacatttttgt 350

                                                                       
Query: 481 gtgtgcaaacattaatctttggttgcaagggattcagaaagggtgagatctgcagccttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtgtgcaaacattaatctttggttgcaagggattcagaaagggtgagatctgcagccttt 290

                                                                       
Query: 541 agatttttggcagtcagctgctaaagcttccttagtataaacaagtaggaactaaagaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agatttttggcagtcagctgctaaagcttccttagtataaacaagtaggaactaaagaag 230

                                        
Query: 601 tgacttttcttaatcattttccctcttct 629
           ||||||||||| |||||||||||||||||
Sbjct: 229 tgacttttcttgatcattttccctcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no335_h09.g1 MSMg01no335_h09.g1 CHROMAT_FILE:
MSMg01no335_h09.g1 PHD_FILE: MSMg01no335_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:14 2005
         (500 letters)



>mm_chrX_61353373_61354272
          Length = 900

 Score =  920 bits (476), Expect = 0.0
 Identities = 494/500 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacatagagaagccctgtcttgaaaaaccaaacaaacaaacaaac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctacatagaaaagccctgtcttgaaaaaccaaacaaacaaacaaac 260

                                                                       
Query: 61  aaaaaaacaacaacaacaataaaaacaacaaaaaagcaagtccaagaatacagacaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaacaacaacaacaataaaaacaacaaaaaagcaagtccaagaatacagacaattt 320

                                                                       
Query: 121 tattatgtgtattattactattttgttttattccttaaatattattttttaatctctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatgtgtattattactattttgttttattccttaaatattattttttaatctctgtt 380

                                                                       
Query: 181 ttataagttgaagcttaccaaaaaatctacttggctaaacaaaagagaaaaaaaaatgac 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ttataagttgaagcttaccaaaaaatctgcttggctaaacaaaagagaaaaaaaaatgac 440

                                                                       
Query: 241 tgtttctggctgtcagtggtttttcttttcttttttttttttcatcaaatgtcttttctg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tgtttctggctgtcagtggtttttcttttgttttttttttttcatcaaatgtcttttctg 500

                                                                       
Query: 301 tatctcttgaaaaggattctgtgatttatcagagtgtatttatttccttgtaaaatgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatctcttgaaaaggattctgtgatttatcagagtgtatttatttccttgtaaaatgatt 560

                                                                       
Query: 361 tgccttttacttttcatcctgtgtatgtgtatagatgtgtttatgtgtagattcatgcat 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcttttacttttcatcctgtgtatgtgtatagatgtgtttatgtgtagattcatgcat 620

                                                                       
Query: 421 atatgaaatgtaggtgcatgtaaggtccaagggagggtgttgaatctgctgatactagac 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 621 atatgaaatgtaggtgcatgtaagggccaagggagggtgttgaatctgctggtactagac 680

                               
Query: 481 ataaagaagttttgaacttc 500
           ||||||||||||||||||||
Sbjct: 681 ataaagaagttttgaacttc 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)