BAC Information

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BAC

Clone NameMSMg01-335H17
ChromosomeX (Build37)
Map Location 71,646,323 - 71,646,877
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik
Downstream geneG6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335H17.T7 (MSMg01no335_h17.b1)MSMg01-335H17.TJ (MSMg01no335_h17.g1)
ACCAG450727AG450728
length725746
length of high quality
(start - end)		545 (53 - 597)517 (72 - 588)
definitionCHROMAT_FILE: MSMg01no335_h17.b1 PHD_FILE: MSMg01no335_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:15 2005CHROMAT_FILE: MSMg01no335_h17.g1 PHD_FILE: MSMg01no335_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAATGTTAT
ACCTCTAGGATGTGCAAGTTACCTCTATAGAAGAATATGTGGGCACTGAT
AGAACCCCAGAGGACATACTTTCATTTGAGATTTCCCCTTTATTTATTTT
CCAGTCTTCCTTCTTTCCTTTCTCTTCTATCCCTCCCTTTCCCTCTCTCC
AGGGTTTTACTAGGTATCCCTGGTTGAACTATGTAGACCAGGCTATCCTC
ATTCACAAAAAAGAGGCCTACCTCTATCTTCCAAATACTAGGATTAAAGG
TGTATGTCATCATGCCTGGCATCCTTTTAAAAATTTTATGTGTATGGGTG
TTTTGCCTGAGTGTATGTCTGTGTGCCACACGGGTACCATGCCTACAGTG
GCCAGAAAAGGGTATCAGGTCCTCTGGGACTGGCATTATAGACAGTTGTG
AGCCACCTTGAGGATGCTGGGGATTGAACTCCAACTCTTTGGAAGATCCA
CAAATGTTCTTAATTGACTAAGCCATTTCTCCAGCCCCAAACTTTCATTT
TTGAGGGGCAGAAATCTAGCCTTTTCCTTTGAAAATAACAGCTTTATTAG
ATGTTTCATTAATATGTCATGATATTTACCATTTTAAAGTATAGAATTTA
TGGCATTTAGAACATTTATTTTCTCCGACTCTATTAAAATTCAGTTCTGG
GAACCCCTTGGATTGCTTTCTGTAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTTGCACTTGCACATAAGGCTTGTTT
ACTAGTTAGGCGCAGTGGAAGCCAGTGCCATCTTATAATGGCGATTGCTC
ACGGCACGCACGCGATTGCTGGCGGAACAGCTCTCCACATCTCCCCCTTT
TTATTTTATTAAAATTTGAGGCTGGTCTAGGCCTCTGCAGTCATGTCCAT
CTGCTGTGGCTCCTGTCTTAGGTCATTCCTCCAATGTCACAGCCTTTCCT
GTCATAGGGTAACCCTATCGCCACCGGGTCCCGTGTCTTAGGTTGGTCTG
TGCATGAGGAAAGTTGCCTGTCTCTGGACACCACACTACTGTGTGACAGT
AACTGCTAAATGACCTAGGGTGAACTCTATAAAAGAGGCCAGCCAAAAAA
CGAATTAGTAAACCTCAGCGAGGTGTAAGTGCTGATCAATGAGCGTTGAG
TCTCTTACATCCCAGTGCAATGTATCCACAAATCCGTGGGACGCAATAGC
AGAGAACTCAGATGCCATTTAGGTCTTAAGCATGGACAGCCAAATTTCAG
GGGAGGCCCCTTGCTCGATGGCAGCAAGTGCTTGAGTTATCACAACCTTG
CCATTTGTTTTGTGGGCTCTGAGCTTGGTTACCAACTATAGCATGAACTT
CTATTCCCATTAAGGGCGCAAATCTAATAAACCCATCCCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_h17.b1 MSMg01no335_h17.b1 CHROMAT_FILE:
MSMg01no335_h17.b1 PHD_FILE: MSMg01no335_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:15 2005
         (545 letters)



>mm_chrX_71646123_71647067
          Length = 945

 Score =  996 bits (515), Expect = 0.0
 Identities = 541/555 (97%), Gaps = 10/555 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaggatgtgcaagttacctctatagaagaatatgtgggcactgatagaaccccagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctaggatgtgcaagttacctctatagaagaatatgtgggcactgatagaaccccagag 260

                                                                       
Query: 61  gacatactttcatttgagatttcccctttatttattttccagtcttccttctttcctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatactttcatttgagatttcccctttatttattttccagtcttccttctttcctttc 320

                                                                       
Query: 121 tcttctatccctccctttccctctctccagggttttactaggtatccctggttg------ 174
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 321 tcttccatccctccctttccctctctccagggttttactaggtatccctggttggcctgg 380

                                                                       
Query: 175 aact----atgtagaccaggctatcctcattcacaaaaaagaggcctacctctatcttcc 230
           ||||    ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aactcactatgtagaccaggctatcctcattcacaaaaaagaggcatacctctatcttcc 440

                                                                       
Query: 231 aaatactaggattaaaggtgtatgtcatcatgcctggcatccttttaaaaattttatgtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aaatactaggattaaaggtgtatgtcatcatgcctggcatccttttaaaaattgtatgtg 500

                                                                       
Query: 291 tatgggtgttttgcctgagtgtatgtctgtgtgccacacgggtaccatgcctacagtggc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgggtgttttgcctgagtgtatgtctgtgtgccacacgggtaccatgcctacagtggc 560

                                                                       
Query: 351 cagaaaagggtatcaggtcctctgggactggcattatagacagttgtgagccaccttgag 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaaagggtatcaggtcctctgggactggcattatagacagttgtgagccaccttgag 620

                                                                       
Query: 411 gatgctggggattgaactccaactctttggaagatccacaaatgttcttaattgactaag 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgctggggattgaactccaactctttggaagatccacaaatgttcttaattgactaag 680

                                                                       
Query: 471 ccatttctccagccccaaactttcatttttgaggggcagaaatctagccttttcctttga 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 ccatttctccagccccaaactttcatttttgaggggcagaaatctagccttttcctttgt 740

                          
Query: 531 aaataacagctttat 545
           |||||||||||||||
Sbjct: 741 aaataacagctttat 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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