Query= MSMg01no337_b20.b1 MSMg01no337_b20.b1 CHROMAT_FILE:
MSMg01no337_b20.b1 PHD_FILE: MSMg01no337_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:23 2005
(556 letters)
>mm_chrX_5973624_5974580
Length = 957
Score = 1004 bits (519), Expect = 0.0
Identities = 550/561 (98%), Gaps = 7/561 (1%)
Strand = Plus / Minus
Query: 1 attgcctctggacaagccgggtgtgcgtggtggcgcatgcctttaatcctagcacttggg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 796 attgcctctggacaagccgggtgtgcgtggtggcacatgcctttaatcctagcacttggg 737
Query: 61 aggcagaggtaggcagatttctgagttcgaggctagcctggtctacaaagtgagttccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aggcagaggtaggcagatttctgagttcgaggctagcctggtctacaaagtgagttccag 677
Query: 121 gacagccagggctatacagagaaaccctgtctcgaaaaaaaaaaaaacaaaaa-aaacaa 179
||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||
Sbjct: 676 gacagccagggctatacagagaaaccctgtctc-aaaaaaaaaaaaa-aaaaacaaaaaa 619
Query: 180 a-aaaaaa--aaaaaaacccaaaaaaattacctctggacaaaaaagtagaaactctaata 236
| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 618 acaaaaaaccaaaaaaacccaaaaaaattacctctggacaaaaaagtggaaactctaata 559
Query: 237 tgtgggtagacacagaggagtggtgactagtaataacacatttggcttgtaattaaagtg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtgggtagacacagaggagtggtgactagtaataacacatttggcttgtaattaaagtg 499
Query: 297 acttggaatagataatcttacccagagtaatcaaaatt-taaaaaaaaaggatttatgtg 355
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 498 acttggaatagataatcttacccagagtaatcaaaattaaaaaaaaaaaggatttatgtg 439
Query: 356 gaatcctatattatgctaataatttaaaatattatgctagagatcgaagacctagctcag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaatcctatattatgctaataatttaaaatattatgctagagatcgaagacctagctcag 379
Query: 416 agctaagagtgctggccactcttgcagaggatccaagtttggttcccagcacccatctct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agctaagagtgctggccactcttgcagaggatccaagtttggttcccagcacccatctct 319
Query: 476 ggcagctcataactatttgtaactctacctccagggagaccccaaatctctagcaatcat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggcagctcataactatttgtaactctacctccagggagaccccaaatctctagcaatcat 259
Query: 536 ggccacctgcagttacatgca 556
|||||||||||||||||||||
Sbjct: 258 ggccacctgcagttacatgca 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_b20.g1 MSMg01no337_b20.g1 CHROMAT_FILE:
MSMg01no337_b20.g1 PHD_FILE: MSMg01no337_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:23 2005
(467 letters)
>mm_chrX_5848796_5849662
Length = 867
Score = 832 bits (430), Expect = 0.0
Identities = 450/467 (96%), Gaps = 16/467 (3%)
Strand = Plus / Plus
Query: 1 caagccagcctgatctatatagtgagttccaggccagctaaggatatttgaacagaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 caagccagcctgatctatatagtgagttccaggccagctaaggatatttgaacagaacct 276
Query: 61 gtctcataacaacaaatttagaaagcaattgatgaggactcctggcatgaacttctggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtctcataacaacaaatttagaaagcaattgatgaggactcctggcatgaacttctggcc 336
Query: 121 ttaatatgcagggaaaccaaccaacacacacacacacacacacacacacacacacacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaatatgcagggaaaccaaccaacacacacacacacacacacacacacacacacacaca 396
Query: 181 cacacacacacacacattttcagcaatggggccataccttaaaattcatgtcttcaaaat 240
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ----------------ttttcagcaatggggccataccttaaaattcatgtcttcaaaat 440
Query: 241 tcttgtcttcaaatgcacatattctgagacaaggaagaacaaaatatgcttttatttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttgtcttcaaatgcacatattctgagacaaggaagaacaaaatatgcttttatttttt 500
Query: 301 atgaggaaatccaccaaaaaaatctgaggaagagttttatgaatttattttaatttttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaggaaatccaccaaaaaaatctgaggaagagttttatgaatttattttaatttttct 560
Query: 361 aattttatgtttaggtaatactttaaaatactccatatttaaaatgcttcccacatgtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattttatgtttaggtaatactttaaaatactccatatttaaaatgcttcccacatgtca 620
Query: 421 ttaattcacagatgtcttatagacttttataanagcaagtatacttt 467
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ttaattcacagatgtcttatagacttttataaaagcaagtatacttt 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
