Query= MSMg01no337_j08.b1 MSMg01no337_j08.b1 CHROMAT_FILE:
MSMg01no337_j08.b1 PHD_FILE: MSMg01no337_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:00 2005
(525 letters)
>mm_chrX_133585403_133586327
Length = 925
Score = 907 bits (469), Expect = 0.0
Identities = 508/521 (97%)
Strand = Plus / Plus
Query: 5 gaattctctcatgcttccatttaaatgttatacctaacattggtgatgcgacagggcttt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcatgcaagcatttaaatgttatacctaacattggtgatgcgacagggcttt 264
Query: 65 tcaatatagcctcaacttttaaaaataatttactttcaattgtgtgcaaatcaagagtgg 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaatataggctcaacttttaaaaataatttactttcaattgtgtgcaaatcaagagtgg 324
Query: 125 gcatgtgcatgagactgcaggtgtgtatggaggccaaagacagcagaacttgagttacag 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatgggcatgagactgcaggtgtgtatggaggccaaagacagcagaacttgagttacag 384
Query: 185 gtggcggggaacaggctgaatgtgatgctgggaacagaatttgggtcaactgcaagacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggcggggaacaggctgaatgtgatgctgggaacagaatttgggtcaactgcaagacat 444
Query: 245 catatgctcttaaccatggtgccacatttctaacctcttacacacacacacgcacgcaca 304
|||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||
Sbjct: 445 catatgctcttaaccatggtgccacatttctaacctcttatacacgcacgcacacgcaca 504
Query: 305 cacgcgcacacacacacacacacacacagaggtagaatatggataagaggggagggaaag 364
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacacacacacacacacacacacacacagaggtagaatatggataagaggggagggaaag 564
Query: 365 ggtccctctaaggataatagaaagaaggaatccagttctggtttctgacccaagtttgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtccctctaaggataatagaaagaaggaatccagttctggtttctgacccaagtttgct 624
Query: 425 atgtgagtttggtcatctccttccctatttttgcatatcttcctcccctaaccttaaaac 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgagtttgatcatctccttccctatttttgcatatcttcctcccctaaccttaaaac 684
Query: 485 agtctctctttactgtgtaacatgtgcatttacatagataa 525
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 685 agtctctctttactgtgtaacatgtgcatttacatatataa 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_j08.g1 MSMg01no337_j08.g1 CHROMAT_FILE:
MSMg01no337_j08.g1 PHD_FILE: MSMg01no337_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:00 2005
(511 letters)
>mm_chrX_133728219_133729131
Length = 913
Score = 791 bits (409), Expect = 0.0
Identities = 445/457 (97%), Gaps = 2/457 (0%)
Strand = Plus / Minus
Query: 1 cctctgttttcagttgtatattcacagaatacaaactcattttacttttagcctag-aaa 59
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 457 cctctgttttcagatgtatattcacagaatacaaactcattttacttttagcctagaaaa 398
Query: 60 aaaaataataaatatgaaaaagctttcaaaacaaagcatgctgtctgaaactacatgcaa 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaaataataaataagaaaaagctttcaaaacaaagcatgctgtctgaaactacatgcaa 338
Query: 120 ctacaaaaa-aaatttttgtctgagagttttgctgaaatcttccataggagtgatccata 178
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctccaaaaataattttttgtctgagagttttgctgaaatcttccataggagtgatccata 278
Query: 179 cacaattcatacacaatattgctgaatttacatatactatgggaattagctgcagcaaaa 238
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 277 cacaatccatacacaatattgctgaatttgcatatactatgggaattagctgcagcaaaa 218
Query: 239 aatttaaagtaaggtacttatttatttagttttatgtgtgcagttgttttgcctgcatgt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aatttaaagtaaggtacttatttatttagttttatgtgtgcagttgttttgcctgcatgt 158
Query: 299 atttctgtgcatcatatgtgtccttggtgcccaagaaggccagaagagggcattagatcc 358
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 157 atttctgtgcatcacatgtgtccttggtgcccaagaaggccagaagagagcattagatcc 98
Query: 359 tttggagctaaagtaagagatatttgtgagtcaccatgtgggtgctgggaaccaaatcca 418
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 97 tttggacctaaagtaagagatatttgtgagtcaccatgtgggtgctaggaaccaaatcca 38
Query: 419 ggtcttctggaagaaatggactcttgactgctgagct 455
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 ggtcttctggaagaaatggactcttgactgctgagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 913
Length adjustment: 10
Effective length of query: 501
Effective length of database: 903
Effective search space: 452403
Effective search space used: 452403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
