NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCACAGCCTCTAGTGTCCCCAGTGGCAGCTGAGAGGGT
GATATCCTCTTAGTTGTGTATTCTACGACAAATATTGAAATTGTTTAGCT
CACTGGAAGTGTTTTGGAATAATCTCTCAGGTGTTTGGGGCCTGCTGACA
AATCAAGTGGGCTCTTTTGGCTGATAAGAGATATCTGAATAATTCTTGAT
CAGATCAGGACTTTCTGAAGACCCATTGTTTGGACAGAGCATCTTTCAGT
CTTCTACTAGAATGACAATGTTTGTGTCACATTTCATAGCAGGAGAATGA
TATAATCTTCCTTTCTGTGGTAGAGAAAACTTAAGAACTGTCTTTGAATC
TGTTCCATAGAGGGGGATAATCTTCTTGGCCCCCTGACAGAATGAGAATT
TATCATAACCCCTCGGGAAGTTGCCTATGGTTCTAGTTCACTTTGTGCAG
AAGTAATGTAGAGTCCCTTTGGAGGACTTAAGTGATTCTACCACATCTTG
AGTATGTGTGGAACACTCAAGTGCAATTCCATGAATGGCAAAGGTACTTG
AGCTCCTTGTGGAATTTTTTTCTCTCTGCTTGGGCAGGTATGAGCTGTGT
GAGGCTCACTTAGGAAGTTGTGCATTTAATTCCCTTTGGACTGTAAGAGA
TGACATGAGCCCATTTTATAATGATTAAAGACT

NNNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTAGCACTCTTAC
ACGCGTTCACGCGACCGGCCAGGAAGAACGCAGCAAACTGGAATCTTCTG
CGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAGAGAGCA
AGAGAGCAAGAGAGCAAGAGACCAAGAGAACAAGAGAGCAAGAGAGCAAG
AGCAAGAGCTCTATTGCTTACATCTTCAGGACCAAGAAGCAAGAGAGAGA
TGGCAAAACCCCGTCCCTTTTAAGGAGAATTATTCTCCGCCTAGGACGTA
TCACTCCCTGATTGGCTGCAGCCCATCAGCCGAGTTGTAGTCACGGGGAA
GGCAGAGCACATGGGGTGGAGAACTACCCTTGGCACATGCGCCGATTATT
TGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTGTAACGGCGAAT
GTGAGGGTGGCTCCCCACAGATCCCCCTTTTCTTTTAATAAGAGCAATAG
GCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAATCCCCAGTGTGCA
GGTAAAGGAGCCATATACATAAACTCCTTTCCAGNTTATCACCCAAAGGG
GTCCTGGCCGGGGCCCGGGTCGGTTTTACTTGGGAGGAGGAACATTGGAA
CCCCACCCTCTTGAAAAAGGAAAGTCCCCCCCAAAAAAGGGCCATAAGGG
C

Query= MSMg01no340_f23.b1 MSMg01no340_f23.b1 CHROMAT_FILE:
MSMg01no340_f23.b1 PHD_FILE: MSMg01no340_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:22 2005
         (587 letters)



>mm_chrX_121320853_121321840
          Length = 988

 Score =  217 bits (112), Expect = 2e-60
 Identities = 366/488 (75%), Gaps = 81/488 (16%)
 Strand = Plus / Plus

                                                                       
Query: 131 tgtttggggcctgctgacaaatcaagtgggctcttttggctgataagagatatctgaata 190
           ||||||||  ||| |||||| ||| | |||| |||||||||| || | ||||| ||||||
Sbjct: 331 tgtttgggatctgatgacaagtcaggagggcccttttggctggtaggggatatttgaata 390

                                                                       
Query: 191 attcttgatcagatcaggactttctgaagaccca-ttgtttggacagagcatctttcagt 249
           |||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||
Sbjct: 391 attcttgatcagatcaggactttctgaagacc-agttgtttgcagagagcatctttcagt 449

                                                                       
Query: 250 cttctactagaatgacaatgttt-gtgtcacatttcatagcaggagaatgatataatctt 308
           ||||| ||||||||| ||||||  | ||||| ||||||||||||||| |||| ||||| |
Sbjct: 450 cttctgctagaatgagaatgttcagggtcacttttcatagcaggagattgatttaatcct 509

                                                                       
Query: 309 cctttctgtggtagagaaaacttaagaactgtctttgaatctgttccatagagggggata 368
           |||          ||              || ||      ||  ||||||||||||||||
Sbjct: 510 cct----------ga--------------tg-ct------ct--tccatagagggggata 536

                                                                       
Query: 369 atcttct--tggccccctgacaga--atgagaatttatcataacccctcgggaagttgcc 424
           |||  ||  |||  ||||||||||  |  ||||  | | | || |||| |||||| ||| 
Sbjct: 537 atc--ctagtggttccctgacagataa--agaaggtctgagaagccctggggaagatgc- 591

                                                                       
Query: 425 t-atggttctagttcactttgtg------cagaa-gta-atgtagagtccctttggagga 475
           | |||||||||||||||||||||      ||||| | | |   |||||| ||||||||||
Sbjct: 592 tgatggttctagttcactttgtgtatgtccagaaagcaca---agagtctctttggagga 648

                                                                       
Query: 476 cttaagtga--ttctaccacatcttgag--tatgtgtggaacactcaagtgcaattccat 531
           ||   | ||  |||||| ||||||  ||  |||||||||||| |||||| ||    || |
Sbjct: 649 ctc--gggagtttctacaacatct--agcctatgtgtggaactctcaagagc----ccct 700

                                                                       
Query: 532 ----gaatggcaaaggtacttgagctcct--------tgtggaatttttttctctctgct 579
               ||||||||||||| |||||||||||        |||||||||||||| ||||||||
Sbjct: 701 ctaagaatggcaaaggtccttgagctcctggtgtaggtgtggaatttttttgtctctgct 760

                   
Query: 580 tgggcagg 587
           ||||||||
Sbjct: 761 tgggcagg 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space:   564306
Effective search space used:   564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)