TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACCTAGAGCTCACTTGCCTCCATGGATACTTCTTTATAAATAATAAAA
GTTCATCTTCCACCCATCAGATTGAAGCTATATTTTGTATTGACATGGAA
AAAAAAAACACTTGAGCATGACCTAACTGGAAAGAGATGGGATAGATCAT
CATTGCTTATTGGCAGGTCTGGAGAAACATACTGACATGCCTAATGAGTT
CCTTATTGGTATGTAAAATACATTAATTTTCCAATAAGATGCTTTGTAGA
GGAAAGCCAAAGCCTCTCTTTACACTGCCTGCAAATCTCAGCATGAGTGT
GAAAATTAAAATCTTGTTTTTATTTAAAAAAAAACACTTCTTTTTTGGTG
GAAGTAGGCAGTGAGAACGCTCCATTGAACTAGTGTGATGATATATTTAT
TATTCTCGCTGGGGAATGACTAGGGTGCTGAGAGATTGTTGGAGAGTTTC
CTGAGCTACATTGAATATACTTCTTTTATTTTTTTTTAGATTGATTTATA
CAGCCATGTTTCTGTAAGTTTGTTTGTATGTTTTAAGCCACGTGTTGGTC
AGAAGACAGTCTTGCAGAGTTGGTTGTCTCCTTCCACTGAGTAAGTCCTA
AGCATTGCGATCAGGTAGGTTGTCAGCTTTGGGAGCATGCACCTGTACTC
ACTGAGACACTCGGGCAGCCCCACTGAATACTTTACTAAAGTGAT

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGACTGGAAACAAGGGCAAGGGAACCTCAGT
GAGTGAGGGGCAAAGGATTGGTATGAGAAAGTTCCCTACTGCTAAGTACG
ACGTGACATTATTAAGGTATGTGAGGAAAAAAAGGTTAAGGGAGAAGTAG
AACAATTCACATCTCCACAGAGATTTATTTAACTATGGCCATTTCACCAT
GGATGATGCCCCCCTGAGTAAGACTTCAAGGGAATAGTATGTATCACTTG
CAATGGCCCACCATGAGAAGCATGGTGAGTGTTAGTTTGGAAGACTCTAA
GAGTGCTAAATAGATGTTCTAGTTCTCCAATAAGACTACACATCTTCCTT
ACCCACACAGGGTATTCAGGATGATATTCTGTGCCTTTAAGACCTCTTCC
TCCTGGGTTTGCTGACCTAACAATGTAAGGGTATGATCACTCATTGTCTG
GGAAGGGGTATACATATGCCAGTTCAGGAAGGCTAAGGTCTGCTATGCGG
GGCTAAGATGGGGAAGGGGGTATCTAAGATAACAACACCAAATTCTAAAA
TCGGACTGTGCAGCATATATACTCAAGGGGAGAATAAATAATATGCACTA
AATGGAATATAATCCCCATACCGCATTGAAAATCTTATGGGGAGCCCGAG
CTACTCAAATCCCTCTCTGTGTGGGGCTTCTTGAACCCTATCTATCCTAA
ATTTTCCATTTTCCCC

Query= MSMg01no341_h13.b1 MSMg01no341_h13.b1 CHROMAT_FILE:
MSMg01no341_h13.b1 PHD_FILE: MSMg01no341_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:44 2005
         (576 letters)



>mm_chrX_55915708_55916684
          Length = 977

 Score = 1060 bits (548), Expect = 0.0
 Identities = 567/574 (98%), Gaps = 3/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacctagagctcacttgcctccatggatacttctttataaataataaaagttca 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattccacctagagctcacttgcctccatggatacttctttataaataataaaaggtca 264

                                                                       
Query: 65  tcttccacccatcagattgaagctatattttgtattgacatggaaaaaaaaaacacttga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 tcttccacccatcagattgaagctatattttgtattgacatggaaaaaaaaa-cacttga 323

                                                                       
Query: 125 gcatgacctaactggaaagagatgggatagatcatcattgcttattggcaggtctggaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcatgacctaactggaaagagatgggatagatcatcattgcttattggcaggtctggaga 383

                                                                       
Query: 185 aacatactgacatgcctaatgagttccttattggtatgtaaaatacattaattttccaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 aacatactgacatgcctaatgagttccttattggtatgtaaaatacattaattttccaaa 443

                                                                       
Query: 245 aagatgctttgtagaggaaagccaaagcctctctttacactgcctgcaaatctcagcatg 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 aagatgctttgtagaggaaagccaaagcctctctttacactgcctacaaatctcagcatg 503

                                                                       
Query: 305 agtgtgaaaattaaaatcttgtttttatttaaaaaaaaa--cacttcttttttggtggaa 362
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 504 agtgtgaaaattaaaatcttgtttttatttaaaaaaaaaaacacttcttttttggtggaa 563

                                                                       
Query: 363 gtaggcagtgagaacgctccattgaactagtgtgatgatatatttattattctcgctggg 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 gtaggcagtgagaacgctccattgaactagtgtgatgatatatttattattctcactggg 623

                                                                       
Query: 423 gaatgactagggtgctgagagattgttggagagtttcctgagctacattgaatatacttc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaatgactagggtgctgagagattgttggagagtttcctgagctacattgaatatacttc 683

                                                                       
Query: 483 ttttatttttttttagattgatttatacagccatgtttctgtaagtttgtttgtatgttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttatttttttttagattgatttatacagccatgtttctgtaagtttgtttgtatgttt 743

                                             
Query: 543 taagccacgtgttggtcagaagacagtcttgcag 576
           ||||||||||||||||||||||||||||||||||
Sbjct: 744 taagccacgtgttggtcagaagacagtcttgcag 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space:   547322
Effective search space used:   547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)