BAC Information

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BAC

Clone NameMSMg01-342C16
ChromosomeX (Build37)
Map Location 87,306,936 - 87,307,288
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik
Downstream geneEG547215, Gm370, LOC194615, LOC629471, LOC100041815, Gm44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342C16.T7 (MSMg01no342_c16.b1)MSMg01-342C16.TJ (MSMg01no342_c16.g1)
ACCAG455784AG455785
length717761
length of high quality
(start - end)		553 (33 - 585)355 (64 - 418)
definitionCHROMAT_FILE: MSMg01no342_c16.b1 PHD_FILE: MSMg01no342_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:36 2005CHROMAT_FILE: MSMg01no342_c16.g1 PHD_FILE: MSMg01no342_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCT
TCTCTGAGCCCCATTTTTTAATGGGGTTATTTGCTTTTCTGAAGTCCACC
TTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTACTGA
CGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTG
TCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTG
TTCCCTTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAA
GTTTGAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTG
ACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATGA
TAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCC
ACTGGATGGTTTTAGCTACCTTGTCGAAGATCAAGTGACCATAGGTGTGT
GGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTATTTGTCTGTC
CCTATACCAGTACCATGTAGTTTTTACCCCCATTGCTTTTGTATTCAAGC
TTTACGTCTGGCATGGTGGTTCTACCCGAGGGTCTTTTATTCTTTGAGAA
GATCTCCCCTTTTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTGGGTTAAATGGTAAACTGAAGATAGAATCTTATA
GTCATTACTTACCAATAACTTAGTATGAATACCCATGAAATAACTGTTAG
CTATTAGAAATAGATACAATTTAAAATGAATGAAGTGTAACATTATGAAA
GCTTATGAAAGAAATACTACTTTATGTATGTACATACATTATCTACAAGG
CCAAATGGACATGTGAATAAAGATACCCATAGAGATCAGAAGAGGACCAC
AGATTCTTTGGAGTTATGTTATTAGTAGTGGTGAGCACTACAGAGGTGTT
GAGAACATTTTCAACAGTCAGTATTATAATCTGCCTAAAATATTCCCAGT
GANATTTTGAATGTGTGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTNTTTNNNTNNNNNNNNNNNNNNNNNTNNTTNNNNNTNNTTTTTNNTTT
TTTNNTTTTTNTTTTTNTTNTTTTTTTTTTTTNNTTTNTNTNTNTTTTTT
TTTTTTTTTTTTTTTTTTTNTNNNNNTNTTTTTTTTTNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTNTTTTNTTTTTTTTNTNNNTTTTTTTTTTNNT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTNTNTTTTTTTTTTTTTTT
TTTNTTTNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_c16.g1 MSMg01no342_c16.g1 CHROMAT_FILE:
MSMg01no342_c16.g1 PHD_FILE: MSMg01no342_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:36 2005
         (355 letters)



>mm_chrX_87306736_87307489
          Length = 754

 Score =  669 bits (346), Expect = 0.0
 Identities = 352/354 (99%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgggttaaatggtaaactgaagatagaatcttatagtcattacttaccaataacttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtgggttaaatggtaaactgaagatagaatcttatagtcattacttaccaataacttag 494

                                                                       
Query: 61  tatgaatacccatgaaataactgttagctattagaaatagatacaatttaaaatgaatga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 493 tatgaatacccatgaaataactgttagctattagaaatagatacaatttaaaatgaataa 434

                                                                       
Query: 121 agtgtaacattatgaaagcttatgaaagaaatactactttatgtatgtacatacattatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtgtaacattatgaaagcttatgaaagaaatactactttatgtatgtacatacattatc 374

                                                                       
Query: 181 tacaaggccaaatggacatgtgaataaagatacccatagagatcagaagaggaccacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tacaaggccaaatggacatgtgaataaagatacccatagagatcagaagaggaccacaga 314

                                                                       
Query: 241 ttctttggagttatgttattagtagtggtgagcactacagaggtgttgagaacattttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttctttggagttatgttattagtagtggtgagcactacagaggtgttgagaacattttca 254

                                                                 
Query: 301 acagtcagtattataatctgcctaaaatattcccagtganattttgaatgtgtg 354
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 253 acagtcagtattataatctgcctaaaatattcccagtga-attttgaatgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 754
Length adjustment: 9
Effective length of query: 346
Effective length of database: 745
Effective search space:   257770
Effective search space used:   257770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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