Query= MSMg01no342_f04.b1 MSMg01no342_f04.b1 CHROMAT_FILE:
MSMg01no342_f04.b1 PHD_FILE: MSMg01no342_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:49 2005
(253 letters)
>mm_chrX_13339856_13340513
Length = 658
Score = 426 bits (220), Expect = e-124
Identities = 244/252 (96%), Gaps = 7/252 (2%)
Strand = Plus / Minus
Query: 5 gaattctttatgtatcgtctaaattagaaacatcccaagttccaaaaagaacacagaaaa 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattctttatg-atagtctaaattagaaacatcccaagttccaaaaagaacacagaaaa 397
Query: 65 ttatagtgtccttatatagtgaaatagtaaaaagaaaatagatgtatatttgttacatac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttatagtgtccttatatagtgaaatagtaaaaagaaaatagatgtatatttgttacatac 337
Query: 125 aaaatatagatgactctcacagcatagtacgtaaaagaaaccaggcatatgggctgggga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaatatagatgactctcacagcatagtacgtaaaagaaaccaggcatatgggctgggga 277
Query: 185 ga-ggctcagcag-aaaaagagccaagctgc-caagcctgatg-cctgagctc-atcgcc 239
|| |||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct: 276 gatggctcagcagaaaaaagagccaagctgcacaagcctgatgacctgagctcaatcgcc 217
Query: 240 tgaa-ccatata 250
|||| |||||||
Sbjct: 216 tgaacccatata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 658
Length adjustment: 9
Effective length of query: 244
Effective length of database: 649
Effective search space: 158356
Effective search space used: 158356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no342_f04.g1 MSMg01no342_f04.g1 CHROMAT_FILE:
MSMg01no342_f04.g1 PHD_FILE: MSMg01no342_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:49 2005
(527 letters)
>mm_chrX_13182382_13183308
Length = 927
Score = 1000 bits (517), Expect = 0.0
Identities = 523/525 (99%)
Strand = Plus / Plus
Query: 1 ctatttctaatatgctccagatggtgctgatctgctggtccaagagccccacatgaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttctaatatgctccagatggtgctgatctgctggtccaagagccccacatgaggag 260
Query: 61 catagactcgttttgcctttcctcagttctagttacttacaatcattccttgtatgaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catagactcgttttgcctttcctcagttctagttacttacaatcattccttgtatgaaaa 320
Query: 121 tattacagggaatatactaggcaccaataatttaaatgttttaatgacttttataataac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattacagggaatatactaggcaccaataatttaaatgttttaatgacttttataataac 380
Query: 181 atattactataattattgcatttattattaattattataaatattaatgtgcctgattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattactataattattgcatttattattaattattataaatattaatgtgcctgattta 440
Query: 241 ttataatttattagaagcatatttatttataaaacagcagaatatatgcaattcaaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttataatttattagaagcatatttatttataaaacagcagaatatatgcaattcaaaaca 500
Query: 301 aatttttcaggcacctagtaagggtctggtatgttacatggctatattacttgtggaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttttcaggcacctagtaagggtctggtatgttacatggctatattacttgtggaaaa 560
Query: 361 tagttacaaggaagtgagtataatcctacaagtataaaaacttcttgtagataatttaaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 tagttacaaggaagtgagtataatcctacaagtataaaaacttcttgtagataatttaga 620
Query: 421 gggaaatgataataagtagtgagaaaagtctaagcataattactttggaagatatataag 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gggaaatgataataagtagtgagaaaagtctaagcataattactttggaagaaatataag 680
Query: 481 aaggattattcagtaaaagttttcaatgttttatacatttttttt 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggattattcagtaaaagttttcaatgttttatacatttttttt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
