BAC Information

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BAC

Clone NameMSMg01-342J23
ChromosomeX (Build37)
Map Location 13,410,511 - 13,410,956
singlet/doubletsinglet
Overlap geneCask
Upstream geneLOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Gpr34, Gpr82
Downstream geneLOC385327, EG385328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342J23.T7 (MSMg01no342_j23.b1)MSMg01-342J23.TJ (MSMg01no342_j23.g1)
ACCAG456130AG456131
length737742
length of high quality
(start - end)
429 (33 - 461)446 (60 - 505)
definitionCHROMAT_FILE: MSMg01no342_j23.b1 PHD_FILE: MSMg01no342_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:11 2005CHROMAT_FILE: MSMg01no342_j23.g1 PHD_FILE: MSMg01no342_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTATACGACTCACTATATTCCGAGAATCCGCGGAATTCTCCACTGA
TCCCTACCAAATGGCTGAGAAGCACCTAAAGAAATGTTCAATACCCTTAG
TCATTAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCATACCA
TCAGAATGGCTGAGATGAAAAATTCAGGTGACAGCAGATGCTGTTGAGGA
TATGGAGAAAGAGGAACACTCATCCATCGCTGATGGGATTGCAAGCTGGT
ACAACCACACTGGAAATCAGCCTGATTGTTCCTCAGAAAATTGGACATAA
TACTACCTATTGACCCACTAATACCACTCCTGGGCATATACCCAGAAGAT
GCTCCAACGTGTAATAAGGACACATACTCCACTATGTTCATTGCAGTCTT
ATTTATAATAGTCAGAAGCTGAAAAGAACCCTGATGTTCCTCAACAGAAG
AATGGATACAGAANATGTGGTATACTTACACAATGGAGTACTATTCAGCT
ATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATGGAACTAGA
AAATATCATCCTGACAGAGGTAACCCAATCCCCAAAGAACCCACTTGGGA
TGCCCTCCCTGATAAGGGGACTTTAAGCCCCGAAACTTCCAAAACCCCGA
AACAATTCCCCAACCCATGGGAGTTCTGAAGTGGGAAAACACACGGGGGA
TTTTCCAACCTCCCTTAAAGGGGAACAAAATCTTTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTAACTATGTTCCTTGTCTGAGATAAATCATGAACCAAAC
AAACTCACAAGTAAGACAGCTCAGTAACACTTAGCCAAGTCCTCTTTTCT
TACTTAAAACGGTCATAGAAGGAAAAGAAATACAAGCATGGAATCACATC
TGCAACAAAACCACCTTTTCTGCTTTTGCTATTAGAGCAGGAGACTATAG
CATGGCCTTTCTTTCAAAAGAAAACCCACTGGCTTTCCTTCAGTGATATG
GGGAAACAGAAGTATCCCAGTCCATCAATAAGAACAGTAGTAAAATCACT
CCCTATATTTTATGTGATGCTGACCACCAATGATCTTAACAATTGAGAGC
AAGGACAAAGGAAAAATCAGTTCAGAATTGCACCCCAACTATAGACATGA
ATCACCATTCTTGGTTGGATGTGTAAATGCTAACAATAACTCTCCTAGGA
AATGATTGAAGAGTACCCAAGATATTTGTTATCTGTGTGTCAATCACTCT
GGAAAGTGCAAGCAACTACAGCAGGACAAAGTACTTCAGGCACAGCAATT
TACTCATGGAGTCCTAAACAAAACAGCACCAAGGGGGATTTGTCTTGGGG
AATAAAAAAAGGCGGAGGAAAATCCAAAAAGAAAATTACAGGGGGGGTTA
AGTTAAATTACCCCCAAAAAAAAAACCCAAGCCCCCCCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_j23.g1 MSMg01no342_j23.g1 CHROMAT_FILE:
MSMg01no342_j23.g1 PHD_FILE: MSMg01no342_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:11 2005
         (446 letters)



>mm_chrX_13410311_13411156
          Length = 846

 Score =  862 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaactatgttccttgtctgagataaatcatgaaccaaacaaactcacaagtaagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaactatgttccttgtctgagataaatcatgaaccaaacaaactcacaagtaagacag 260

                                                                       
Query: 61  ctcagtaacacttagccaagtcctcttttcttacttaaaacggtcatagaaggaaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagtaacacttagccaagtcctcttttcttacttaaaacggtcatagaaggaaaagaa 320

                                                                       
Query: 121 atacaagcatggaatcacatctgcaacaaaaccaccttttctgcttttgctattagagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaagcatggaatcacatctgcaacaaaaccaccttttctgcttttgctattagagca 380

                                                                       
Query: 181 ggagactatagcatggcctttctttcaaaagaaaacccactggctttccttcagtgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagactatagcatggcctttctttcaaaagaaaacccactggctttccttcagtgatat 440

                                                                       
Query: 241 ggggaaacagaagtatcccagtccatcaataagaacagtagtaaaatcactccctatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggaaacagaagtatcccagtccatcaataagaacagtagtaaaatcactccctatatt 500

                                                                       
Query: 301 ttatgtgatgctgaccaccaatgatcttaacaattgagagcaaggacaaaggaaaaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatgtgatgctgaccaccaatgatcttaacaattgagagcaaggacaaaggaaaaatca 560

                                                                       
Query: 361 gttcagaattgcaccccaactatagacatgaatcaccattcttggttggatgtgtaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcagaattgcaccccaactatagacatgaatcaccattcttggttggatgtgtaaatg 620

                                     
Query: 421 ctaacaataactctcctaggaaatga 446
           ||||||||||||||||||||||||||
Sbjct: 621 ctaacaataactctcctaggaaatga 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)